Transcript Information: R_Transcript_85896.p1


Annotated TAIR IDAT5G59400.2
Annotated Gene NameFUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: PGR5-like B (TAIR:AT4G11960.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:23957756-23959518 | Forward length=301
E-Value5E-107
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.8889578489483
Replicate 22.1147352937279
Replicate 33.8727218238099
Condition 2: 8 Hour
Replicate 12.9946741302386
Replicate 23.6195672045085
Replicate 34.8317236903188
Condition 3: 24 Hour
Replicate 12.2297150904605
Replicate 21.7453801999737
Replicate 33.0705772762194


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_85896.p1 GENE.R_Transcript_85896~~R_Transcript_85896.p1 ORF type:3prime_partial len:278 (+),score=22.15 R_Transcript_85896:107-937(+)
ATGGCTGGAGCTGGTACCTCTCTCTCTCCACCACCTCGCTTTATCGGACCCTCCAAATCCACCGCCATCAAGTTTATCCGACCCAACTTCACAACCGGAGCTCCGTTAACTTTCCGAATATCCACCCACAGCCATCGCCCGCACGTGCTTTCCACGTGCTCCAGCTCCAAAACTCCGTCTCCGGTCGTCTCCGAGGGCCCGTCTTGTATTTTTGTGGGCCCCATCGAAACCGCTAGCCAAGAAACCCTTGAGGCTCTCTATCGCCAAGCGAGAGATGCGTATTACAGTGGGACTCCTTTGATAGTTGATGATATGTTTGATCGTGTCGAGTTGAAATTGAGGTGGTATGGGTCGAAATACGTGGTCAAGTATCCAAGGTGTAGTTTAAGGCGGCAATCCACCTATGCTGATGCCCAGGAAGATCCTTCGCAGGTGTTTGCTCTGGCCAGTATTTGGTTCCTGATCTTTGTGTTTGGCGGTTCTGTATGTCTTTTGCCCATCATGTACACTATTTTTCTGGCTTATCAAGACATGTTTAACTCGGAAGCAGTCTACTTCAGCCAATCATCGACAGTGGAGTCTCTTGCCTTGCTAAATTGTGGGCTGTTCATGCTGCTGGGTTCTGCCATAGGTTGTCCAATTGCATCAGCTTCTGTTAGACAACTGAAGGGATTATGGCGGAATGATTTGGTGGCATTAAAGGGTGCGTGTCCAAACTGTGGGGAGGAGGTTTTCGCATTTGTGAAGCCAAACCAGAGCAATAATAGCTCTCCCCATAGAGCAGATTGCCATGTATGTGATTGCCTCCTAGAATTTAGGACCAAAGCTGAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_85896.p1 GENE.R_Transcript_85896~~R_Transcript_85896.p1 ORF type:3prime_partial len:278 (+),score=22.15 R_Transcript_85896:107-937(+)
MAGAGTSLSPPPRFIGPSKSTAIKFIRPNFTTGAPLTFRISTHSHRPHVLSTCSSSKTPSPVVSEGPSCIFVGPIETASQETLEALYRQARDAYYSGTPLIVDDMFDRVELKLRWYGSKYVVKYPRCSLRRQSTYADAQEDPSQVFALASIWFLIFVFGGSVCLLPIMYTIFLAYQDMFNSEAVYFSQSSTVESLALLNCGLFMLLGSAIGCPIASASVRQLKGLWRNDLVALKGACPNCGEEVFAFVKPNQSNNSSPHRADCHVCDCLLEFRTKAE

Click here to download the sequence:
Link to NCBI Protein BLAST