Transcript Information: R_Transcript_85900.p1


Annotated TAIR IDAT5G59400.2
Annotated Gene NameFUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: PGR5-like B (TAIR:AT4G11960.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:23957756-23959518 | Forward length=301
E-Value3E-55
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.6105553783575
Replicate 21.1468567454281
Replicate 31.1549615594699
Condition 2: 8 Hour
Replicate 10.92593606943364
Replicate 21.127439420564
Replicate 33.2794926751119
Condition 3: 24 Hour
Replicate 11.1575364988758
Replicate 20.55601493001455
Replicate 31.2875120404057


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_85900.p1 GENE.R_Transcript_85900~~R_Transcript_85900.p1 ORF type:complete len:238 (+),score=15.32 R_Transcript_85900:107-820(+)
ATGGCTGGAGCTGGTACCTCTCTCTCTCCACCACCTCGCTTTATCGGACCCTCCAAATCCACCGCCATCAAGTTTATCCGACCCAACTTCACAACCGGAGCTCCGTTCACTTTCCGAATAACCCCCCACAGCCACCGCTCGCACTTGCTTTCCACGTGCTTCAGCTCCAAAACCCCGTCTCCGGTCGTCTCCGAGGGCCCGTCTTGTATTTTTGTGGGCCCCATCGAAACCGCTAGCCAAGAAACCCTTGAGGCTCTCTATCGCCAAGCGAGAGATGCGTATTACAGTGGGACTCCTTTGATAGTTGATGATATGTTTGATCGTGTCGAGTTGAAATTGAGGTGGTATGGGTCGAAATACGTGGTCAAGTATCCAAGGTGTAGTTTTAGGCGGCAGTCCACCTATGCTGATGCCCAGGAAGATCCTTCGCAGGTGTTTGCTCTGGCCAGTATTTGGTTCCTGATCTTTGTGTTTGGCGGTTCTGTATGTCTTTTGCCCATCATGTACACTATTTTTCTAGCTTATCAAGACATGTTTAACTCTGAAGGAGTCTACCTCAGCCAATCATCGACAGTGGAGTCTCTTGCCTTGCTAAATTGTGGGCTGTTCATGCTGCTGGGTTCTGCCATAGGTTGTCCAATTGCATCAGCTTCTGGTAATGTGCCTTGCCATCCTTTTCTTCTTGTTTGGCTCTATATCTTGGACCAATGCTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_85900.p1 GENE.R_Transcript_85900~~R_Transcript_85900.p1 ORF type:complete len:238 (+),score=15.32 R_Transcript_85900:107-820(+)
MAGAGTSLSPPPRFIGPSKSTAIKFIRPNFTTGAPFTFRITPHSHRSHLLSTCFSSKTPSPVVSEGPSCIFVGPIETASQETLEALYRQARDAYYSGTPLIVDDMFDRVELKLRWYGSKYVVKYPRCSFRRQSTYADAQEDPSQVFALASIWFLIFVFGGSVCLLPIMYTIFLAYQDMFNSEGVYLSQSSTVESLALLNCGLFMLLGSAIGCPIASASGNVPCHPFLLVWLYILDQC*

Click here to download the sequence:
Link to NCBI Protein BLAST