Transcript Information: R_Transcript_85902.p1


Annotated TAIR IDAT5G59400.2
Annotated Gene NameFUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: PGR5-like B (TAIR:AT4G11960.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:23957756-23959518 | Forward length=301
E-Value9E-36
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 112.369775192454
Replicate 214.402420946717
Replicate 312.683896024316
Condition 2: 8 Hour
Replicate 114.974826496662
Replicate 217.556064255476
Replicate 315.451371023966
Condition 3: 24 Hour
Replicate 17.5893577612245
Replicate 27.6555444082996
Replicate 38.8636159475865


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_85902.p1 GENE.R_Transcript_85902~~R_Transcript_85902.p1 ORF type:5prime_partial len:121 (+),score=13.27 R_Transcript_85902:3-365(+)
AGCCAATCATCGACAGTGGAGTCTCTTGCCTTGCTAAATTGTGGGCTGTTCATGCTGCTGGGTTCTGCCATAGGTTGTCCAATTGCATCAGCTTCTGTTAGACAACTGAAGGGATTATGGCGGAATGATTTGGTGGCATTAAAGGGTGCGTGTCCAAACTGTGGGGAGGAGGTTTTCGCATTTGTGAAGCCAAACCAGAGCAATAATAGCTCTCCCCATAGAGCAGATTGCCATGTATGTGATTGCCTCCTAGAATTTAGGACCAAAGCTGAGTCCATCACAAAAGTAGGCAGAAGATGGGTTCACGGCCGTGTATACCTGATATCTGAAAGGAGAGGTCGTTGGCAAAAAATACGGACATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_85902.p1 GENE.R_Transcript_85902~~R_Transcript_85902.p1 ORF type:5prime_partial len:121 (+),score=13.27 R_Transcript_85902:3-365(+)
SQSSTVESLALLNCGLFMLLGSAIGCPIASASVRQLKGLWRNDLVALKGACPNCGEEVFAFVKPNQSNNSSPHRADCHVCDCLLEFRTKAESITKVGRRWVHGRVYLISERRGRWQKIRT*

Click here to download the sequence:
Link to NCBI Protein BLAST