Transcript Information: R_Transcript_85905.p1


Annotated TAIR IDAT5G59400.2
Annotated Gene NameFUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: PGR5-like B (TAIR:AT4G11960.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:23957756-23959518 | Forward length=301
E-Value6E-38
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.978209438849
Replicate 21.8842833706934
Replicate 31.9088947996794
Condition 2: 8 Hour
Replicate 12.8252921092975
Replicate 22.7234407370675
Replicate 33.3743378717386
Condition 3: 24 Hour
Replicate 12.3546468951491
Replicate 21.4137986468319
Replicate 31.9642811898498


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_85905.p1 GENE.R_Transcript_85905~~R_Transcript_85905.p1 ORF type:complete len:156 (+),score=4.58 R_Transcript_85905:107-574(+)
ATGGCTGGAGCTGGTACCTCTCTCTCTCCACCACCTCGCTTTATCGGACCCTCCAAATCCACCGCCATCAAGTTTATCCGACCCAACTTCACAACCGGAGCTCCGTTCACTTTCCGAATATCCACCCATAGCCACCGCCCGCACGTGCTTTCCACGTGCTTCTGCTCCAAAACCTCGTCTCCGGTTGTCTCCGAGGGCCCGTCTTGTATTTTTGTGGGCCCCATCGAAACCGCTAGCCAAGAAACCCTTGAGGCTCTCTATCGCCAAGCGAGAGATGCGTATTACAGTGGGACTCCTTTGATAGTTGATGATATGTTTGATCGTGTCGAGTTGAAATTGAGGTGGTATGGGTCGAAATACGTGGTCAAGTATCCAAGGTGTAGTTTAAGGCGGCAATCCACCTATGCTGATGCCCAGGTGATACTCTTTGCTCCTTGCTCTTCCTTTTCATTATTTGAGTGTCTGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_85905.p1 GENE.R_Transcript_85905~~R_Transcript_85905.p1 ORF type:complete len:156 (+),score=4.58 R_Transcript_85905:107-574(+)
MAGAGTSLSPPPRFIGPSKSTAIKFIRPNFTTGAPFTFRISTHSHRPHVLSTCFCSKTSSPVVSEGPSCIFVGPIETASQETLEALYRQARDAYYSGTPLIVDDMFDRVELKLRWYGSKYVVKYPRCSLRRQSTYADAQVILFAPCSSFSLFECL*

Click here to download the sequence:
Link to NCBI Protein BLAST