Transcript Information: R_Transcript_85909.p1


Annotated TAIR IDAT5G59400.2
Annotated Gene NameFUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: PGR5-like B (TAIR:AT4G11960.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:23957756-23959518 | Forward length=301
E-Value5.3E-39
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.3037717709839
Replicate 21.0192378842863
Replicate 30.88958204256903
Condition 2: 8 Hour
Replicate 10.71318053244404
Replicate 21.0854797010284
Replicate 31.0573753759449
Condition 3: 24 Hour
Replicate 10.66867399692342
Replicate 20.42825745418597
Replicate 32.7625258342686


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_85909.p1 GENE.R_Transcript_85909~~R_Transcript_85909.p1 ORF type:5prime_partial len:103 (+),score=11.75 R_Transcript_85909:3-311(+)
AGCCAATCATCGACAGTGGAGTCTCTTGCCTTGCTAAATTGTGGGCTGTTCATGCTGCTGGGTTCTGCCATAGGTTGTCCAATTGCATCAGCTTCTGTTAGACAACTGAAGGGATTATGGCGGAATGATTTGGTGGCATTAAAGGGTGCGTGTCCAAACTGTGGGGAGGAGGTTTTCGCATTTGTGAAGCCAAACCAGAGCAATAATAGCTCTCCCCATAGAGCAGATTGCCATGTATGTGATTGCCTCCTAGAATTTAGGACCAAAGCTGAGGTAAGTACTCCCTTTTTTCGGTTAACAAAAGTATAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_85909.p1 GENE.R_Transcript_85909~~R_Transcript_85909.p1 ORF type:5prime_partial len:103 (+),score=11.75 R_Transcript_85909:3-311(+)
SQSSTVESLALLNCGLFMLLGSAIGCPIASASVRQLKGLWRNDLVALKGACPNCGEEVFAFVKPNQSNNSSPHRADCHVCDCLLEFRTKAEVSTPFFRLTKV*

Click here to download the sequence:
Link to NCBI Protein BLAST