Transcript Information: R_Transcript_86082.p1


Annotated TAIR IDAT5G06490.1
Annotated Gene NameRING/U-box superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:1977996-1978589 | Reverse length=197
E-Value1.8E-13
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 15.1781449516933
Replicate 24.616207892945
Replicate 33.4116417696397
Condition 2: 8 Hour
Replicate 11.2156103165299
Replicate 22.3788172171474
Replicate 32.317226887709
Condition 3: 24 Hour
Replicate 13.0936052292651
Replicate 23.1284055163939
Replicate 32.3284792220103


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_86082.p1 GENE.R_Transcript_86082~~R_Transcript_86082.p1 ORF type:5prime_partial len:141 (+),score=27.28,zf-RING_2|PF13639.2|6.8e-14,zf-RING_11|PF17123.1|1.6e-10,zf-RING_11|PF17123.1|4.3e+03,zf-rbx1|PF12678.3|8.7e-10,zf-C3HC4_2|PF13923.2|3.7e-08,zf-C3HC4|PF00097.21|2.7e-07,zf-RING_5|PF14634.2|2.1e-06 R_Transcript_86082:1-423(+)
GAGCAAAGGATGACTAATGGACTTGAATCAACTGTGGTTGCTGCAATCCCCACTATGAAGTTTCATCGCGATGCTTTCAGCTCCCTTGAAGATGCACAGTGTTCAATTTGCTTGGGGGAGTACCAAGAAAACGAAATACTGAGAATTATGCCCAAGTGTGGTCACAATTTTCATCTTTCCTGCATTGATATCTGGTTGACAAGGCAATCGACATGCCCTGTATGCCGTCTTCCCTTGAAGCATCATCCTGACAAAAATGGTGCAAGGTTTGTTTCCTTTGATGACAATGATGATGTTCAACATTCTATGGATCAGTTGTTCGTTACAGTTTCAGTAGAAAATGACACTAGCCAACAACACAGCCGTTCTACATCTACAAACCCAGATCCCAATTTGGCTGAAGAATCAGTGCCTAGACACTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_86082.p1 GENE.R_Transcript_86082~~R_Transcript_86082.p1 ORF type:5prime_partial len:141 (+),score=27.28,zf-RING_2|PF13639.2|6.8e-14,zf-RING_11|PF17123.1|1.6e-10,zf-RING_11|PF17123.1|4.3e+03,zf-rbx1|PF12678.3|8.7e-10,zf-C3HC4_2|PF13923.2|3.7e-08,zf-C3HC4|PF00097.21|2.7e-07,zf-RING_5|PF14634.2|2.1e-06 R_Transcript_86082:1-423(+)
EQRMTNGLESTVVAAIPTMKFHRDAFSSLEDAQCSICLGEYQENEILRIMPKCGHNFHLSCIDIWLTRQSTCPVCRLPLKHHPDKNGARFVSFDDNDDVQHSMDQLFVTVSVENDTSQQHSRSTSTNPDPNLAEESVPRH*

Click here to download the sequence:
Link to NCBI Protein BLAST