Transcript Information: R_Transcript_86481.p1


Annotated TAIR IDAT1G68890.1
Annotated Gene Namemagnesium ion binding;thiamin pyrophosphate binding;hydro-lyases;catalytics;2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthases
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:25896988-25906553 | Forward length=1715
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 110.725660023107
Replicate 25.6469267623296
Replicate 38.4010040083689
Condition 2: 8 Hour
Replicate 16.904734532801
Replicate 26.9069064529823
Replicate 38.4618755296343
Condition 3: 24 Hour
Replicate 18.4571547407679
Replicate 24.7633607220888
Replicate 38.4553969206107


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_86481.p1 GENE.R_Transcript_86481~~R_Transcript_86481.p1 ORF type:complete len:1227 (+),score=233.67,MR_MLE_C|PF13378.2|2.8e-23,Abhydrolase_6|PF12697.3|1e-20,TPP_enzyme_M_2|PF16582.1|1.6e-20,Abhydrolase_1|PF00561.16|4.9e-15,Abhydrolase_1|PF00561.16|1.9,Abhydrolase_5|PF12695.3|7.3e+03,Abhydrolase_5|PF12695.3|4.1e-13,TPP_enzyme_C|PF02775.17|9e-10,Hydrolase_4|PF12146.4|1e-08 R_Transcript_86481:1633-5313(+)
ATGGTTCTCACAACAATTGATTCTGCTGTACACTGGGCTACTTGTTCACCGTGTGGTCCTGTTCATGTGAATTGTCCTTTCAGGGAACCACTGGAAAATAGTCCCAGAGATTGGAAAGGAAGCTGTTTAGATGGACTGGATGTATGGATCTCAAGCATTCAACCATTTACCAAATACATGCAAGTGCAATCTTCTCTAACACATAGTGCTACCATAGGCTTAACAACAGAGGTTGGAAAGATAATTGAGAATGCTATGAACGGGCTTTTAGTAATTGGTGCTATCCACAAAGAAGATGAAATTTGGGCAGCTCTTCTATTAGCCAGACATCTTTCGTGGCCTATTGTTGCAGACATCTTGTCTGGATTACGACTACGAAGGTTAATGACATCTTATCCTGAATATGAAGAAAATTTCATTTTTCTTGATCATTTTGATCATGTGCTCCTCTCTGACATAGTAAGGGAGCGGATGCGAATTGATGTAATCATTCAGGTAGGGAGCAAAATAACGAGCAAGAGGGTTTCCGATTTGCTGGAACAATGTTTTCCATGCTCCTATATCATGGTTGACAAACATCCTTGTAGACATGATCCCTCGCATATAGTGACACACAGGTTCCAGAGCACAATCTGCCAATTTGCTGGATGTCTGCTGAAAGGCACCTTACCACGCAAGAACAGCAAATGGATTAGTTTTCTGAGAGCTTTGAATTCAATGGTTGCATGGGAGTTATCTTTTCAGATCAGCTCTGAGTACGCACTCACTGAACCTCATGTTGCACATGCCCTCTCAGAAGCGCTTGTCTCAGGGACTGCTTTGTTTATTGGAAATAGTATGCCAATCCGTGATGCAGACATGTATGCTCAAGGTGTTGTAAGTGATAGGGGCACAGCACCTCAGTTGAAACTACCATGTCACTGGATAAGTATAGCTGGCAATCGGGGAGCTAGTGGTATTGATGGTTTGCTGAGCACAGCTACTGGTTTTGCTGTAGGATGCAAGAAAAGAGTTCTGTGTGTGATGGGAGATGTTTCCTTTCTTCATGACACAAATGGATTGGCAATCCTCAGCTCAAGGATGTTGCGGAAACCGATGACAGTTGTTGTAATAAACAATAGAGGTGGTGGGATCTTTAGTTTTCTTCCTCTTGCAGAAAAAGCTGAGCCAAAAGTTCTGGAGAAGTACTTTTACTACAATCATGGCATTTCATTAAGCAAGCTGTGTGCAGCACATGGTGTGAAGCATGTGTTAGTGGAAACTAAAGTGGAACTTCAAGAGGCTTTATTAACATCACAAAAGGCAGACACAGATCGTGTTATAGAAGTTACAAGCTCCATCAACAGTAATTCCACATTTCATAGTGTCTTGAGAAATTGTGCAAGTCAAGCAGCAACTCATGCTTTCACAAATCTGTTGCGACTTCCTACTCCAGAATCTGCTCAACATGATTTCTGTTTGTGCAAGATTGCGAAATTGGAGTACATATTGTATGGAGTCAACCTAACTGCTCCACCAACTTCAGTTTCAGTCAAAAGTAGACCATCTGATCCACGTAGACAAGGTTTCATATTAGAATTGACGCTTGATGATGGCAGTACTGGGTTTGGCGAGGTTGCGCCCCTTGAAATTCAGGAAGAGAACTTGCAAGATGTGGAGGAGCAATTGCGGTTTCTAGTGCACGCACTAAAAGGAGCTACTGTTACCTCTCTCCTTCCCCTGTTGAGAAATTCCTTTTCTTCATGGATATGGAGTACCATAGGAGTCCCACCATCTTCTATATTCCCAAGTGTCCGTTGCGGTCTAGAGATGGCCGTTTTGAATGCTATAGCTGCAAAGAAAAAATGTGCATTGCTTGAAATTCTTTGGCCACAATTGGGTAAAGGTGAGCTGGTCAATCAGCAACCACCAAGCATTGACATCTGTGCCCTTGTCGATTCTGAAGGAAATCCAGCTGAAGTTGCTGCTGTTGTCTCTGCACTTGTTGAGGAAGGATTTCGTGCAGTAAAACTGAAAGTGGCACGTAGGGACCATCCAAGGGAAGATGCTGCAGTTATAAAAGAAATAAGAAGAAAGGTCAGTGTGCAGATTGAGCTTCGTGTGGATGCTAACCGTAAATGGACCTATGAAGAAGCCATTGAATTTAGCTCTCTTGTGAAGGACTGTGGGTTGCAATATATTGAGGAGCCAGTTGAGCGTGAAGAGGATATTGTGAAGTTTTGCGAAGAGAGTGGCCTGCCTGTGGCACTAGATGAGACTGTCGACAAAATACAAGGAAATATTCCTGATTCTTTAGCCCGGTTCACTCATCCTGGAATAGTGGCTCTTGTCATAAAACCGAGTTTTGTTGGTGGTTTCGAGAATGCATCGGTAATATCATCATGGGCTCATACTAAGGGAAAACTGGCTGTTGTCAGTTCAGCCTTTGAAAGTAGCCTCAGTTTGTCTTCCTATGTTCAACTTGCATGTTTCTTTGAGATGAGAAGGGCAGAGATTTTTCAAGCATCAGATAAGAAAATGACTAAATGTGTAGCGCATGGTCTTGGAACATACAAATGGCTTAAAGAAGATGTAACAGAAGACCCACTTGGCATATCTCTACAACCAGGCAATAAATATCTTGGAGCATCTATCGCTGATGCTGATCGTGTCCTCCGTAAATTTCAAATTAATCAAAATGTTACTTCAAAAAAATGTATTGACGAGCATATATCAACATATCAGCTCATCATGCAATCAGAGGAGTTTTCTTTTCAGATCAAAGTGCAAGAGACTGGAACGAGCATAGGGGATAATGTACTCCTATTTCTTCATGGTTTCCTGGGAACTGCTGAAGATTGGACTCCTGTCATGAAAGCACTGTCAGGCTCTGCTAAATGCATCTCCATTGACCTTCCTGGCCATGGGAAGTCAAAAGTAGAATTCCTGGACAGTGTGGATGCAACGAAAGATAAAAGGTTATCAATTGACATACTTGCTGCCATATTGAGTGAATTGATAGATAAAATAGCTCCAGGCAAAGTAACGCTGGTTGGATATTCCATGGGAGCAAGGATAGCATTGTACATGGCATTACGATTATGTGGCAAGATTGATCGAGCCATAGTGATTTCTGGAAGTCCTGGGTTGAAAGATGAGACGGCGAGAAACATCCGTGCTGCTAAAGATGATTCCCGGGCACAGGCACTCCTCTCATTTGGTTTGGTACCCTTTCTGAATAACTGGTATCATGGTGATCTGTGGCAGAGCTTTAGGGAACACCCCAGATTCAAGAATATTGTAGCCCGCCGCTTGCAGCACGATGATATTCATGGTCTGGCAAGAACTATGTCTGATTTGAGTATAGGAAGGCAGCCATCCCTGTGGGAAGACTTGAAACATTGCAAAATACCGCTCTTGCTTATTTCTGGATCAAGAGATGTGAAATTCAGGAATATTAATCGGGATATCTGCAAAAGCATCAGTCAGGATGTATGTCACGAAGCTGTTCAGATTCCCAACTGTGGACACGCTGTTCATCTTGAGAACCCTCTCACTCTTGTCAGATTAGTCAGGCAGTTTTTGACAAAAACTAGAAGTGATGAGCATTGTACCTATGTCATCCTGTCCTTTATTTTGTATCAGTGCAAAGAAATTGATTGTGACAGACTAAGTGCTGACATTCAGGTTCGAGGAAACTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_86481.p1 GENE.R_Transcript_86481~~R_Transcript_86481.p1 ORF type:complete len:1227 (+),score=233.67,MR_MLE_C|PF13378.2|2.8e-23,Abhydrolase_6|PF12697.3|1e-20,TPP_enzyme_M_2|PF16582.1|1.6e-20,Abhydrolase_1|PF00561.16|4.9e-15,Abhydrolase_1|PF00561.16|1.9,Abhydrolase_5|PF12695.3|7.3e+03,Abhydrolase_5|PF12695.3|4.1e-13,TPP_enzyme_C|PF02775.17|9e-10,Hydrolase_4|PF12146.4|1e-08 R_Transcript_86481:1633-5313(+)
MVLTTIDSAVHWATCSPCGPVHVNCPFREPLENSPRDWKGSCLDGLDVWISSIQPFTKYMQVQSSLTHSATIGLTTEVGKIIENAMNGLLVIGAIHKEDEIWAALLLARHLSWPIVADILSGLRLRRLMTSYPEYEENFIFLDHFDHVLLSDIVRERMRIDVIIQVGSKITSKRVSDLLEQCFPCSYIMVDKHPCRHDPSHIVTHRFQSTICQFAGCLLKGTLPRKNSKWISFLRALNSMVAWELSFQISSEYALTEPHVAHALSEALVSGTALFIGNSMPIRDADMYAQGVVSDRGTAPQLKLPCHWISIAGNRGASGIDGLLSTATGFAVGCKKRVLCVMGDVSFLHDTNGLAILSSRMLRKPMTVVVINNRGGGIFSFLPLAEKAEPKVLEKYFYYNHGISLSKLCAAHGVKHVLVETKVELQEALLTSQKADTDRVIEVTSSINSNSTFHSVLRNCASQAATHAFTNLLRLPTPESAQHDFCLCKIAKLEYILYGVNLTAPPTSVSVKSRPSDPRRQGFILELTLDDGSTGFGEVAPLEIQEENLQDVEEQLRFLVHALKGATVTSLLPLLRNSFSSWIWSTIGVPPSSIFPSVRCGLEMAVLNAIAAKKKCALLEILWPQLGKGELVNQQPPSIDICALVDSEGNPAEVAAVVSALVEEGFRAVKLKVARRDHPREDAAVIKEIRRKVSVQIELRVDANRKWTYEEAIEFSSLVKDCGLQYIEEPVEREEDIVKFCEESGLPVALDETVDKIQGNIPDSLARFTHPGIVALVIKPSFVGGFENASVISSWAHTKGKLAVVSSAFESSLSLSSYVQLACFFEMRRAEIFQASDKKMTKCVAHGLGTYKWLKEDVTEDPLGISLQPGNKYLGASIADADRVLRKFQINQNVTSKKCIDEHISTYQLIMQSEEFSFQIKVQETGTSIGDNVLLFLHGFLGTAEDWTPVMKALSGSAKCISIDLPGHGKSKVEFLDSVDATKDKRLSIDILAAILSELIDKIAPGKVTLVGYSMGARIALYMALRLCGKIDRAIVISGSPGLKDETARNIRAAKDDSRAQALLSFGLVPFLNNWYHGDLWQSFREHPRFKNIVARRLQHDDIHGLARTMSDLSIGRQPSLWEDLKHCKIPLLLISGSRDVKFRNINRDICKSISQDVCHEAVQIPNCGHAVHLENPLTLVRLVRQFLTKTRSDEHCTYVILSFILYQCKEIDCDRLSADIQVRGN*

Click here to download the sequence:
Link to NCBI Protein BLAST