Transcript Information: R_Transcript_86484.p1


Annotated TAIR IDAT1G68890.1
Annotated Gene Namemagnesium ion binding;thiamin pyrophosphate binding;hydro-lyases;catalytics;2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthases
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:25896988-25906553 | Forward length=1715
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.0434850150015
Replicate 20.64632411131964
Replicate 30.96703905419113
Condition 2: 8 Hour
Replicate 10.88295555218738
Replicate 21.2783265784319
Replicate 30.86208177088909
Condition 3: 24 Hour
Replicate 11.1307275327629
Replicate 20.89229719346223
Replicate 30.86626799552364


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_86484.p1 GENE.R_Transcript_86484~~R_Transcript_86484.p1 ORF type:3prime_partial len:1137 (+),score=217.13,MR_MLE_C|PF13378.2|2.5e-23,TPP_enzyme_M_2|PF16582.1|1.4e-20,Abhydrolase_6|PF12697.3|2.5e-20,Abhydrolase_1|PF00561.16|4.5e-15,Abhydrolase_1|PF00561.16|1.7,Abhydrolase_5|PF12695.3|6.5e+03,Abhydrolase_5|PF12695.3|3.6e-13,TPP_enzyme_C|PF02775.17|8.1e-10,Hydrolase_4|PF12146.4|9.2e-09 R_Transcript_86484:1633-5040(+)
ATGGTTCTCACAACAATTGATTCTGCTGTACACTGGGCTACTTGTTCACCGTGTGGTCCTGTTCATGTGAATTGTCCTTTCAGGGAACCACTGGAAAATAGTCCCAGAGATTGGAAAGGAAGCTGTTTAGATGGACTGGATGTATGGATCTCAAGCATTCAACCATTTACCAAATACATGCAAGTGCAATCTTCTCTAACACATAGTGCTACCATAGGCTTAACAACAGAGGTTGGAAAGATAATTGAGAATGCTATGAACGGGCTTTTAGTAATTGGTGCTATCCACAAAGAAGATGAAATTTGGGCAGCTCTTCTATTAGCCAGACATCTTTCGTGGCCTATTGTTGCAGACATCTTGTCTGGATTACGACTACGAAGGTTAATGACATCTTATCCTGAATATGAAGAAAATTTCATTTTTCTTGATCATTTTGATCATGTGCTCCTCTCTGACATAGTAAGGGAGCGGATGCGAATTGATGTAATCATTCAGGTAGGGAGCAAAATAACGAGCAAGAGGGTTTCCGATTTGCTGGAACAATGTTTTCCATGCTCCTATATCATGGTTGACAAACATCCTTGTAGACATGATCCCTCGCATATAGTGACACACAGGTTCCAGAGCACAATCTGCCAATTTGCTGGATGTCTGCTGAAAGGCACCTTACCACGCAAGAACAGCAAATGGATTAGTTTTCTGAGAGCTTTGAATTCAATGGTTGCATGGGAGTTATCTTTTCAGATCAGCTCTGAGTACGCACTCACTGAACCTCATGTTGCACATGCCCTCTCAGAAGCGCTTGTCTCAGGGACTGCTTTGTTTATTGGAAATAGTATGCCAATCCGTGATGCAGACATGTATGCTCAAGGTGTTGTAAGTGATAGGGGCACAGCACCTCAGTTGAAACTACCATGTCACTGGATAAGTATAGCTGGCAATCGGGGAGCTAGTGGTATTGATGGTTTGCTGAGCACAGCTACTGGTTTTGCTGTAGGATGCAAGAAAAGAGTTCTGTGTGTGATGGGAGATGTTTCCTTTCTTCATGACACAAATGGATTGGCAATCCTCAGCTCAAGGATGTTGCGGAAACCGATGACAGTTGTTGTAATAAACAATAGAGGTGGTGGGATCTTTAGTTTTCTTCCTCTTGCAGAAAAAGCTGAGCCAAAAGTTCTGGAGAAGTACTTTTACTACAATCATGGCATTTCATTAAGCAAGCTGTGTGCAGCACATGGTGTGAAGCATGTGTTAGTGGAAACTAAAGTGGAACTTCAAGAGGCTTTATTAACATCACAAAAGGCAGACACAGATCGTGTTATAGAAGTTACAAGCTCCATCAACAGTAATTCCACATTTCATAGAGTCAACCTAACTGCTCCACCAACTTCAGTTTCAGTCAAAAGTAGACCATCTGATCCACGTAGACAAGGTTTCATATTAGAATTGACGCTTGATGATGGCAGTACTGGGTTTGGCGAGGTTGCGCCCCTTGAAATTCAGGAAGAGAACTTGCAAGATGTGGAGGAGCAATTGCGGTTTCTAGTGCACGCACTAAAAGGAGCTACTGTTACCTCTCTCCTTCCCCTGTTGAGAAATTCCTTTTCTTCATGGATATGGAGTACCATAGGAGTCCCACCATCTTCTATATTCCCAAGTGTCCGTTGCGGTCTAGAGATGGCCGTTTTGAATGCTATAGCTGCAAAGAAAAAATGTGCATTGCTTGAAATTCTTTGGCCACAATTGGGTAAAGGTGAGCTGGTCAATCAGCAACCACCAAGCATTGACATCTGTGCCCTTGTCGATTCTGAAGGAAATCCAGCTGAAGTTGCTGCTGTTGTCTCTGCACTTGTTGAGGAAGGATTTCGTGCAGTAAAACTGAAAGTGGCACGTAGGGACCATCCAAGGGAAGATGCTGCAGTTATAAAAGAAATAAGAAGAAAGGTCAGTGTGCAGATTGAGCTTCGTGTGGATGCTAACCGTAAATGGACCTATGAAGAAGCCATTGAATTTAGCTCTCTTGTGAAGGACTGTGGGTTGCAATATATTGAGGAGCCAGTTGAGCGTGAAGAGGATATTGTGAAGTTTTGCGAAGAGAGTGGCCTGCCTGTGGCACTAGATGAGACTGTCGACAAAATACAAGGAAATATTCCTGATTCTTTAGCCCGGTTCACTCATCCTGGAATAGTGGCTCTTGTCATAAAACCGAGTTTTGTTGGTGGTTTCGAGAATGCATCGGTAATATCATCATGGGCTCATACTAAGGGAAAACTGGCTGTTGTCAGTTCAGCCTTTGAAAGTAGCCTCAGTTTGTCTTCCTATGTTCAACTTGCATGTTTCTTTGAGATGAGAAGGGCAGAGATTTTTCAAGCATCAGATAAGAAAATGACTAAATGTGTAGCGCATGGTCTTGGAACATACAAATGGCTTAAAGAAGATGTAACAGAAGACCCACTTGGCATATCTCTACAACCAGGCAATAAATATCTTGGAGCATCTATCGCTGATGCTGATCGTGTCCTCCGTAAATTTCAAATTAATCAAAATGTTACTTCAAAAAAATGTATTGACGAGCATATATCAACATATCAGCTCATCATGCAATCAGAGGAGTTTTCTTTTCAGATCAAAGTGCAAGAGACTGGAACGAGCATAGGGGATAATGTACTCCTATTTCTTCATGGTTTCCTGGGAACTGCTGAAGATTGGACTCCTGTCATGAAAGCACTGTCAGGCTCTGCTAAATGCATCTCCATTGACCTTCCTGGCCATGGGAAGTCAAAAGTAGAATTCCTGGACAGTGTGGATGCAACGAAAGATAAAAGGTTATCAATTGACATACTTGCTGCCATATTGAGTGAATTGATAGATAAAATAGCTCCAGGCAAAGTAACGCTGGTTGGATATTCCATGGGAGCAAGGATAGCATTGTACATGGCATTACGATTATGTGGGAAGATTGATCGAGCCATAGTGATATCTGGAAGCCCTGGGTTGAAAGACGAGACGGCGAGAAACATCCGTGCTGCTAAAGATGATTCCCGGGCACAGGCACTCCTCTCATTTGGTTTGGTACCCTTTCTGAATAACTGGTATCATGGTGATCTGTGGCAGAGCTTTAGGGAACACCCCAGATTCAAGAATATTGTAGCCCGCCGCTTGCAGCACGATGATATTCATGGTCTGGCAAGAACTATGTCTGATTTGAGTATAGGAAGGCAGCCATCCCTGTGGGAAGACTTGAAACATTGCAAAATACCGCTCTTGCTTATTTCTGGATCAAGAGATGTGAAATTCAGGAATATTAATCGGGATATCTGCAAAAGCATCAGTCAGGATGTATGTCACGAAGCTGTTCAGATTCCCAACTGTGGACACGCTGTTCATCTTGAGAACCCTCTCACTCTT

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_86484.p1 GENE.R_Transcript_86484~~R_Transcript_86484.p1 ORF type:3prime_partial len:1137 (+),score=217.13,MR_MLE_C|PF13378.2|2.5e-23,TPP_enzyme_M_2|PF16582.1|1.4e-20,Abhydrolase_6|PF12697.3|2.5e-20,Abhydrolase_1|PF00561.16|4.5e-15,Abhydrolase_1|PF00561.16|1.7,Abhydrolase_5|PF12695.3|6.5e+03,Abhydrolase_5|PF12695.3|3.6e-13,TPP_enzyme_C|PF02775.17|8.1e-10,Hydrolase_4|PF12146.4|9.2e-09 R_Transcript_86484:1633-5040(+)
MVLTTIDSAVHWATCSPCGPVHVNCPFREPLENSPRDWKGSCLDGLDVWISSIQPFTKYMQVQSSLTHSATIGLTTEVGKIIENAMNGLLVIGAIHKEDEIWAALLLARHLSWPIVADILSGLRLRRLMTSYPEYEENFIFLDHFDHVLLSDIVRERMRIDVIIQVGSKITSKRVSDLLEQCFPCSYIMVDKHPCRHDPSHIVTHRFQSTICQFAGCLLKGTLPRKNSKWISFLRALNSMVAWELSFQISSEYALTEPHVAHALSEALVSGTALFIGNSMPIRDADMYAQGVVSDRGTAPQLKLPCHWISIAGNRGASGIDGLLSTATGFAVGCKKRVLCVMGDVSFLHDTNGLAILSSRMLRKPMTVVVINNRGGGIFSFLPLAEKAEPKVLEKYFYYNHGISLSKLCAAHGVKHVLVETKVELQEALLTSQKADTDRVIEVTSSINSNSTFHRVNLTAPPTSVSVKSRPSDPRRQGFILELTLDDGSTGFGEVAPLEIQEENLQDVEEQLRFLVHALKGATVTSLLPLLRNSFSSWIWSTIGVPPSSIFPSVRCGLEMAVLNAIAAKKKCALLEILWPQLGKGELVNQQPPSIDICALVDSEGNPAEVAAVVSALVEEGFRAVKLKVARRDHPREDAAVIKEIRRKVSVQIELRVDANRKWTYEEAIEFSSLVKDCGLQYIEEPVEREEDIVKFCEESGLPVALDETVDKIQGNIPDSLARFTHPGIVALVIKPSFVGGFENASVISSWAHTKGKLAVVSSAFESSLSLSSYVQLACFFEMRRAEIFQASDKKMTKCVAHGLGTYKWLKEDVTEDPLGISLQPGNKYLGASIADADRVLRKFQINQNVTSKKCIDEHISTYQLIMQSEEFSFQIKVQETGTSIGDNVLLFLHGFLGTAEDWTPVMKALSGSAKCISIDLPGHGKSKVEFLDSVDATKDKRLSIDILAAILSELIDKIAPGKVTLVGYSMGARIALYMALRLCGKIDRAIVISGSPGLKDETARNIRAAKDDSRAQALLSFGLVPFLNNWYHGDLWQSFREHPRFKNIVARRLQHDDIHGLARTMSDLSIGRQPSLWEDLKHCKIPLLLISGSRDVKFRNINRDICKSISQDVCHEAVQIPNCGHAVHLENPLTL

Click here to download the sequence:
Link to NCBI Protein BLAST