Transcript Information: R_Transcript_86929.p1


Annotated TAIR IDAT3G63270.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: PIF / Ping-Pong family of plant transposases (TAIR:AT3G55350.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:23375932-23377398 | Reverse length=396
E-Value1.4E-190
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 14.1336222009414
Replicate 22.2438794338028
Replicate 34.1383673519767
Condition 2: 8 Hour
Replicate 12.6791149942279
Replicate 24.4949355355055
Replicate 35.0344161771557
Condition 3: 24 Hour
Replicate 14.4980945458861
Replicate 23.9284176140977
Replicate 34.3998184994017


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_86929.p1 GENE.R_Transcript_86929~~R_Transcript_86929.p1 ORF type:complete len:393 (+),score=83.25,DDE_Tnp_4|PF13359.2|1.8e-25,Plant_tran|PF04827.10|5.8e-06 R_Transcript_86929:326-1504(+)
ATGGCTCCTTTGAAGAAGAAGAAGTCGAAGAAAACCAAAGATTTGAAGAAATTGAAGAAAAGCAAGACAGTAAATGTAGTCCCAATTGAACCCAGATCAATTGAATCTGATTGGTGGGATAGTTTCTGCCACAAGAGCTCCTCTGCCCCAGGTTTGACAATACCTAGTGATGAAGAGGAGGGGTTCAGATATTTCTTTAGGGTATCAAAAAAGACATTTGAGTATATATGTTCACTTGTAAGAGAGGATTTGATTTCAAGACCTCCTTCAGGGCTAATTAACATAGAAGGAAGGCTTCTTAGTGTCGAAAAGCAAGTTGCAATTGCTATGAGAAGGTTGGCTTCTGGTGATTCACAAGTTTCTGTTGGTGCAGCCTTTGGGGTTGGTCAGTCCACTGTGTCTCAGGTCACTTGGAGGTTCATTGAGTCGTTAGGGGAGCGTGCGAGGCACCATATTAAGTGGCCTAATCAGGACCGGTTAGACGAAATCAAATTGAAGTTTCAAACCTCTTTTGGGTTGCCTAATTGTTGTGGAGCCATTGATGCTACTCATATAGTTATGACCCTCCCGGCTGTTCAAACTTCGGATGATTGGTGTGATGAGTCTAACAATTATAGCATGTTGCTTCAAGGGATTGTTGATCATGAAATGCGGTTTTTGGACATTGTTACTGGTTGGCCAGGAGCAATGACTATATCTAGGATGTTGAAATGTTCAGGGTTTTACAAGCTTTGTGAAAGTGGCGAGAGATTGAATCAACAAGTGAAGTTAGATGGAGTAGAGATCAGAGAATACATAGTTGGAGGAATGCAATACCCTCTTCTTTCATGGCTCATGACCCCTTATGAAAATCAAGACCTTTCACCTAGTAAATCAAATTTTAGGGCTGCACATCAGGCTGCTAGATTACTTGCTGTAAGGGCACTCTCACATTTGAAGGGAAGTTGGAGAATTCTTAGCAAGGTCATGTGGAGACCAGACAAGAGAAAATTACCAAGCATTGTCTTGGTTTGTTGTTTACTTCACAATATCATGATTGATTGTGGTGATAACTTGCAATTAGATGTTGCTTCCCCTGTTCACCATGACTCGGGTTATGGAGAGCAGTGCTCAATGCATGTCGATACATTAGGGAGCATTATGAGGGATAATTTAGCCAAGCACTTGCAGTCTAGCTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_86929.p1 GENE.R_Transcript_86929~~R_Transcript_86929.p1 ORF type:complete len:393 (+),score=83.25,DDE_Tnp_4|PF13359.2|1.8e-25,Plant_tran|PF04827.10|5.8e-06 R_Transcript_86929:326-1504(+)
MAPLKKKKSKKTKDLKKLKKSKTVNVVPIEPRSIESDWWDSFCHKSSSAPGLTIPSDEEEGFRYFFRVSKKTFEYICSLVREDLISRPPSGLINIEGRLLSVEKQVAIAMRRLASGDSQVSVGAAFGVGQSTVSQVTWRFIESLGERARHHIKWPNQDRLDEIKLKFQTSFGLPNCCGAIDATHIVMTLPAVQTSDDWCDESNNYSMLLQGIVDHEMRFLDIVTGWPGAMTISRMLKCSGFYKLCESGERLNQQVKLDGVEIREYIVGGMQYPLLSWLMTPYENQDLSPSKSNFRAAHQAARLLAVRALSHLKGSWRILSKVMWRPDKRKLPSIVLVCCLLHNIMIDCGDNLQLDVASPVHHDSGYGEQCSMHVDTLGSIMRDNLAKHLQSS*

Click here to download the sequence:
Link to NCBI Protein BLAST