Transcript Information: R_Transcript_87234.p1


Annotated TAIR IDAT5G61400.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:24681550-24683514 | Forward length=654
E-Value1.4E-171
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.9947098049318
Replicate 20.7229265113396
Replicate 31.0630372237735
Condition 2: 8 Hour
Replicate 10.87973167475132
Replicate 21.1716030904813
Replicate 31.7662495364149
Condition 3: 24 Hour
Replicate 11.5465588701298
Replicate 21.1886067665581
Replicate 31.8021313739212


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_87234.p1 GENE.R_Transcript_87234~~R_Transcript_87234.p1 ORF type:complete len:668 (+),score=92.83,PPR_2|PF13041.2|1.1e+04,PPR_2|PF13041.2|1.6e+02,PPR_2|PF13041.2|1.6e-11,PPR_2|PF13041.2|6.5e-10,PPR_2|PF13041.2|7.6e-15,PPR_2|PF13041.2|1.9e-16,PPR_2|PF13041.2|6.8e-17,PPR_2|PF13041.2|1.3e-15,PPR_2|PF13041.2|0.02,PPR_2|PF13041.2|3e-18,PPR_2|PF13041.2|1e-12,PPR_2|PF13041.2|7.2e-14,PPR_2|PF13041.2|0.02,PPR_2|PF13041.2|6.5e-10,PPR_2|PF13041.2|0.2,PPR_1|PF12854.3|10,PPR_1|PF12854.3|3e+03,PPR_1|PF12854.3|7.7e-10,PPR_1|PF12854.3|8e-08,PPR_1|PF12854.3|8.8e-10,PPR_1|PF12854.3|5.7e-11,PPR_1|PF12854.3|9.6e-11,PPR_1|PF12854.3|2e-07,PPR_1|PF12854.3|4.8e-11,PPR_1|PF12854.3|6.4e-07,PPR_1|PF12854.3|5.9e-07,PPR_1|PF12854.3|6.8e-06,PPR_1|PF12854.3|2.9e-09,PPR_1|PF12854.3|3e+03,PPR_1|PF12854.3|2.3e+03,PPR|PF01535.16|1.9e+03,PPR|PF01535.16|86,PPR|PF01535.16|0.44,PPR|PF01535.16|1.5,PPR|PF01535.16|1.9e-06,PPR|PF01535.16|0.00039,PPR|PF01535.16|1.5e-07,PPR|PF01535.16|7.1e-05,PPR|PF01535.16|9.3e-07,PPR|PF01535.16|2.3e-06,PPR|PF01535.16|7.8e-10,PPR|PF01535.16|1.7e-06,PPR|PF01535.16|0.0015,PPR|PF01535.16|0.0011,PPR|PF01535.16|3.8e-07,PPR|PF01535.16|2.8e+03,PPR_3|PF13812.2|1.6e+04,PPR_3|PF13812.2|1.6e+02,PPR_3|PF13812.2|2.2e+02,PPR_3|PF13812.2|0.0025,PPR_3|PF13812.2|0.19,PPR_3|PF13812.2|0.0039,PPR_3|PF13812.2|0.00011,PPR_3|PF13812.2|0.00043,PPR_3|PF13812.2|0.00074,PPR_3|PF13812.2|3.4e-07,PPR_3|PF13812.2|0.06,PPR_3|PF13812.2|0.0014,PPR_3|PF13812.2|37,PPR_3|PF13812.2|0.0092,PPR_3|PF13812.2|6.4e+02,MRP-S27|PF10037.5|61,MRP-S27|PF10037.5|1.3e+02,MRP-S27|PF10037.5|27,MRP-S27|PF10037.5|0.0079,MRP-S27|PF10037.5|0.11 R_Transcript_87234:350-2353(+)
ATGTTTGAGCAAAGAATGTTGAAGCCTTTTCACCCAGCAAAGAAAAGGCTCTACTTTTTCAAGAGACCCTTATCATGTTGTTTAAGTAATATTCATTATTATTATTACTATTCTTCATCAACAACAATGGATTATATGTCTAAGCTTACAAGCACTATACTTGATAGCAAAAACCCTAAAGAAGCACTGGACTATTTTGAGTCAGTTTCACCTAGGATTAACATTACGAAAAATCGTCGCCCCCATTCGGCGATTATTCATGTGTTAGTCAATGCCAAATGGTATTTGGAAGCAAGGTCTTTGTTAAAAGGCCTCATCCAGGACCTTTTAAAGACCTGCTCACCACCCCGTGTGTGTTCTTTACTTTACAAGGACTTGAATCGAGTAAATGTGTCGAAATTTAGCAACAATGTGTTTGGGACTTTGATAGTTGCATTATCCGAAATGGGTCTTGTGGATGAAGCCATCTGGGTTTATCGAAAGATTGGTGGTTTGCCTGCTATGCAGGCTTGTAATGCACTTTTGAATGGGTTGATTAAGGTAGGTAGGATTGGTTCCATGTGGGATTTTTATCATGGTATGGTTGCTCAAGGAATGGTGCCTAATGTGTTCACGTATGGAGTACTAATTGACGCCTGTTGTGAGGAGGGGGACATTGAGAAAGCCGGGAAGTTGTTCACTGAAATGGTTGGGAATAAGATTGAGCCATCAGTTGTTATCTTGACGACAATTATTCGTGGTTTTTGCAATGAGAATAGGTTGTCAGAAGCAGAAGATTTGTTGAGTGTGATGAAAGAGTTTGACCTAGCTCCCAATTTATACACGTACAACATTTTGATGAGTGGACACTGTAAAATGGGCAACCTACCATGTGCTCTGGAGTTGTATAGGGAAATGCTAAGCATTAACTTGAAGCCTAATGTTGTAACATTTGGAATCTTAATTGATGCTCTTTGTAAAGATGGTGAAGTGGATACAGCAAGGAACCTATTTCCTCATATGGTGAAGGGTGGTGTTCCTCCCAATGTTTATGTATATAATAGTTTGATTGATGGGCTCTGTAGGGCCAGAGATCTTTCTGGAGCTCTGGCTCTGCTTGTGGAGATGGAAAAATTGAATATCAGATCCGATGTGTTTACTTATAGTATACTTATAAAGGGTCTATCTAATGTCGGGAGAGTGAAAGAAGCATCTAATCTACTTTCAAAGATGAAAAGTAGGGGCATCATTGCAAATGTTGTGGCGTACAACTCGCTTATAAATGGACACTGCAAACATGGAAACATGGAAAAAGCTCTGGAGTTGTGTTCACAAATGATGCAAGAGGGCATACAACCAAATGTCGTGACCTTCTCTTCCCTCATACATGGTTATAGTCAAGCCAGGGATATGGAGGCTGCAATGGGAATGTATATAGAAATGATAATCAAAGGTGTTCCACCTGATGTTGTCACCTACACAGATTTACTGGACGGGCATTTCAAAAATGCAGATACAAAGGCTGCTCTTCAGATATACAGAGAAATGCAAGACGCTGGATTCATCCCTAATGCTTTCACCATCAGTTGTGTAATTGATGGACTGTGCAAAGATGGATATCTAAATAAAGCCCTCAAGATATTCCTGGAATTGACTAGTTGTGAACATTTTGAAGATTCTCAGAATCAGTTTGACGCTAATAGAGTTCCTGTAAATCATGTTGCATATACAGCCCTTATACATGGTCTGTGCAAAGAAGGAAGAATGCGTACAGCCAGTAAGTTTTTCTCAGATATGAGAGCGCATGGTATTAGAGCTGATAGAATCATCTACATGATCATTATACTGGGGCATTCCCGAGCACAGCATCTGCGCAATTTACTGATGCTGCAGGCAGATATGGTCAAGTTAGGTTTCTTGCCAGACACTACCATATATTCATTCTTATGTAAGGCTTACCTAAACATTGGGGATGAGAAAGTAGCTCTTCGGCCTTTGGCCAATTTAGGGACGAGTTCATTTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_87234.p1 GENE.R_Transcript_87234~~R_Transcript_87234.p1 ORF type:complete len:668 (+),score=92.83,PPR_2|PF13041.2|1.1e+04,PPR_2|PF13041.2|1.6e+02,PPR_2|PF13041.2|1.6e-11,PPR_2|PF13041.2|6.5e-10,PPR_2|PF13041.2|7.6e-15,PPR_2|PF13041.2|1.9e-16,PPR_2|PF13041.2|6.8e-17,PPR_2|PF13041.2|1.3e-15,PPR_2|PF13041.2|0.02,PPR_2|PF13041.2|3e-18,PPR_2|PF13041.2|1e-12,PPR_2|PF13041.2|7.2e-14,PPR_2|PF13041.2|0.02,PPR_2|PF13041.2|6.5e-10,PPR_2|PF13041.2|0.2,PPR_1|PF12854.3|10,PPR_1|PF12854.3|3e+03,PPR_1|PF12854.3|7.7e-10,PPR_1|PF12854.3|8e-08,PPR_1|PF12854.3|8.8e-10,PPR_1|PF12854.3|5.7e-11,PPR_1|PF12854.3|9.6e-11,PPR_1|PF12854.3|2e-07,PPR_1|PF12854.3|4.8e-11,PPR_1|PF12854.3|6.4e-07,PPR_1|PF12854.3|5.9e-07,PPR_1|PF12854.3|6.8e-06,PPR_1|PF12854.3|2.9e-09,PPR_1|PF12854.3|3e+03,PPR_1|PF12854.3|2.3e+03,PPR|PF01535.16|1.9e+03,PPR|PF01535.16|86,PPR|PF01535.16|0.44,PPR|PF01535.16|1.5,PPR|PF01535.16|1.9e-06,PPR|PF01535.16|0.00039,PPR|PF01535.16|1.5e-07,PPR|PF01535.16|7.1e-05,PPR|PF01535.16|9.3e-07,PPR|PF01535.16|2.3e-06,PPR|PF01535.16|7.8e-10,PPR|PF01535.16|1.7e-06,PPR|PF01535.16|0.0015,PPR|PF01535.16|0.0011,PPR|PF01535.16|3.8e-07,PPR|PF01535.16|2.8e+03,PPR_3|PF13812.2|1.6e+04,PPR_3|PF13812.2|1.6e+02,PPR_3|PF13812.2|2.2e+02,PPR_3|PF13812.2|0.0025,PPR_3|PF13812.2|0.19,PPR_3|PF13812.2|0.0039,PPR_3|PF13812.2|0.00011,PPR_3|PF13812.2|0.00043,PPR_3|PF13812.2|0.00074,PPR_3|PF13812.2|3.4e-07,PPR_3|PF13812.2|0.06,PPR_3|PF13812.2|0.0014,PPR_3|PF13812.2|37,PPR_3|PF13812.2|0.0092,PPR_3|PF13812.2|6.4e+02,MRP-S27|PF10037.5|61,MRP-S27|PF10037.5|1.3e+02,MRP-S27|PF10037.5|27,MRP-S27|PF10037.5|0.0079,MRP-S27|PF10037.5|0.11 R_Transcript_87234:350-2353(+)
MFEQRMLKPFHPAKKRLYFFKRPLSCCLSNIHYYYYYSSSTTMDYMSKLTSTILDSKNPKEALDYFESVSPRINITKNRRPHSAIIHVLVNAKWYLEARSLLKGLIQDLLKTCSPPRVCSLLYKDLNRVNVSKFSNNVFGTLIVALSEMGLVDEAIWVYRKIGGLPAMQACNALLNGLIKVGRIGSMWDFYHGMVAQGMVPNVFTYGVLIDACCEEGDIEKAGKLFTEMVGNKIEPSVVILTTIIRGFCNENRLSEAEDLLSVMKEFDLAPNLYTYNILMSGHCKMGNLPCALELYREMLSINLKPNVVTFGILIDALCKDGEVDTARNLFPHMVKGGVPPNVYVYNSLIDGLCRARDLSGALALLVEMEKLNIRSDVFTYSILIKGLSNVGRVKEASNLLSKMKSRGIIANVVAYNSLINGHCKHGNMEKALELCSQMMQEGIQPNVVTFSSLIHGYSQARDMEAAMGMYIEMIIKGVPPDVVTYTDLLDGHFKNADTKAALQIYREMQDAGFIPNAFTISCVIDGLCKDGYLNKALKIFLELTSCEHFEDSQNQFDANRVPVNHVAYTALIHGLCKEGRMRTASKFFSDMRAHGIRADRIIYMIIILGHSRAQHLRNLLMLQADMVKLGFLPDTTIYSFLCKAYLNIGDEKVALRPLANLGTSSF*

Click here to download the sequence:
Link to NCBI Protein BLAST