Transcript Information: R_Transcript_87436.p1


Annotated TAIR IDAT5G28740.1
Annotated Gene NameTetratricopeptide repeat (TPR)-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:10780774-10783772 | Forward length=917
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 122.124801157235
Replicate 217.398188328239
Replicate 319.627507658145
Condition 2: 8 Hour
Replicate 121.364364922622
Replicate 222.430978649465
Replicate 325.017737103752
Condition 3: 24 Hour
Replicate 125.716582390908
Replicate 222.308767613458
Replicate 324.883827272042


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_87436.p1 GENE.R_Transcript_87436~~R_Transcript_87436.p1 ORF type:complete len:957 (+),score=196.88,Suf|PF05843.10|0.26,Suf|PF05843.10|38,Suf|PF05843.10|6.3,Suf|PF05843.10|0.00066,Suf|PF05843.10|2.6,TPR_14|PF13428.2|3.6e+02,TPR_14|PF13428.2|1.1e+04,TPR_14|PF13428.2|1.8e+03,TPR_14|PF13428.2|45,TPR_14|PF13428.2|1.2e+02,TPR_14|PF13428.2|1e+02,TPR_14|PF13428.2|26,TPR_14|PF13428.2|34,TPR_14|PF13428.2|1.7e+02,TPR_14|PF13428.2|1.4,TPR_14|PF13428.2|1.9e+02,TPR_12|PF13424.2|29,TPR_12|PF13424.2|0.14,TPR_12|PF13424.2|0.41,TPR_12|PF13424.2|1.3e+02,TPR_12|PF13424.2|1.6e+03,Mad3_BUB1_I|PF08311.8|2.8e+02,Mad3_BUB1_I|PF08311.8|14,Mad3_BUB1_I|PF08311.8|4.5e+02,Mad3_BUB1_I|PF08311.8|1,Mad3_BUB1_I|PF08311.8|3.1,Mad3_BUB1_I|PF08311.8|7.5e+02 R_Transcript_87436:133-2871(+)
ATGTCAATCCCAAAAGAACTCTACCCATCCCAAGACGATCTCCTCTACGAAGAAGAGCTCCTTCGAAACCCCTTCTCTCTCCGTCTATGGTGGCGCTACTTAGTCGCCCGTACAGATTCCCCTTTCAAGAAACGCGCCATCATCTACGAACGTGCCCTCAAAGCTTTACCAGGTAGCTACAAACTCTGGTACGCTTACCTTCGCGAACGCCTCGAACTCGTTCGTAATCTCCCCATCACTCACTCCCAGTACCAAACCCTAAACAACACCTTCGAACGTGCCCTGGTTACCATGCACAAAATGCCCCGTATTTGGATCATGTACTTGCAAACCCTAACCGAACAGAAATTAGTCACTCGTACTCGATTAACCTTCGATCGAGCCCTTTGCGCCTTGCCTGTTACACAACACGACCGGATTTGGGAACCCTATTTGGTTTTCGTCAGCCAAAGAGGGGTCCCAATTGAGACCTCACTTAGGGTTTATAGGAGGTACTTGAAGTATGATCCTAGTCACATTGAGGATTTCATTGAGTTTCTTGTGAGTTCTGAGCGTTGGCAGGAGGCTGCTGAGAGATTAGCTGGGGTTTTGAATGATGATCAGTTCTTTTCGATTAAAGGCAAGACTAAACATCGGCTTTGGTTGGAGTTGTGTGACTTGTTGACTAAGCATGCTACTGAGGTTTCGGGGTTGAATGTGGATGCTATTATCAGGGGTGGGATTAGGAAGTTCACTGACGAGGTTGGGAGGCTGTGGACATCGTTGGCGGATTATTATATTCGGAGGAAGTTGCCTGAGAAGGCGAGGGATGTTTTTGAGGAGGGGATGATGAGTGTGGTTACTGTTAGGGATTTTAGTGTGATTTTCGATGCATACTCGCAGTTTGAGGAGAGTATGTTAGCTTTTAATATGGAGAATTTGAATTTGAGCGACGAGGAGGGGGTGGAGAATGGTGGGGTCGAGGATGGTGAGGAGGAGGAGGAGGATGTTAGGAAGGCTGTTGAGCTTTCGTTAGGGAAGTTCGAGAGGAAGATTCTTAAAGGGTTTTGGTTACATGATGATAATGATGTTGATTTGAGGTTAGCTAGGTTGGAGAATTTGATGGATAGACGGCCTGAGTTGGCGAATAGTGTGCTTTTACGACAGAACCCTCATAACGTTGAGCAATGGCATAGGAGGGTTAAGCTGTTTGAGGGTAATCCTACTAGGCAGATTTTGACTTATACTGAGGCTGTTAGGACTGTTGATCCAATGAAAGCTGTTGGAAAGCCTCATACCTTGTGGGTTGCTTTCGCTAAGCTATATGAGAATCATAAGGATCTTGCTAATGCTAGAGTGATCTTTGATAAAGCTGTGCAAGTGAATTATAAGAGTGTGGATCATTTGGCAAGTGTTTGGTGTGAGTGGGCCGAGATGGAGTTGAGGCATAAGAACTTTAGAGGAGCGTTGGACCTTATGAGGCGCGCTACGGCTGAGCCCTCTGTTGAAGTTAAGAGGAGAGTTGCTGCTGATGGTCATGAACCTGTACAGATGAAGCTACACAAATCATTAAGGTTATGGGCATTTTATGTGGATTTGGAAGAAAGCCTTGGTAATTTGGAGTCCACTCGTGCTGTGTATGAGAGGATTTTTGATCTGAGGATTGCCACTCCGCAAATCGTAACAAACTATGCAATGCTTTTGGAGGAACATAAATACTTTGAAGATGCTTTTAGGGTGTATGAAAGAGGTGTGAAGATCTTCAAATATCCACATGTAAAGGATATATGGGTTACTTATTTGTCCAAGTTTGTGAAGAGATATGGGAAGACTAAGCTAGAACGAGCAAGAGAGTTGTTTGAAAATGCTGTTGAAACGGCTCCAGCAGAGTGTGTAAAGCCTTTGTACTTGCAATATGCTAAGCTGGAGGAGGACTTTGGATTAGCAAAGCGAGCAATGAAGGTCTATGATCAAGCTACAAAAGCTGTTCCAGCTAGTGAGAAGTTAAGCATGTATGAGATCTACGTAGCTCGCGCAACAGAAATATTCGGCGTGCCAAAAACCAGGGACATTTATGAACAAGCCATCCAATCTGGTCTCCCTGACAAAGATGTGAAGACCATGTGCATGAAGTATGCTGAGCTTGAAAAGAGCCTTGGAGAGATTGATCGTGCGCGTGCGATTTACACATATGCTTCCCAGTTTGCAGACCCGAGGACGGATCCTGATATCTGGAATCGATGGCATGACTTTGAGGTCCAGCATGGAAATGAAGACACATTTAGAGAAATGCTTCACATCAAGAGAACTGTCTCAGCAAGTTTTAGCCAGACTCAATTTATTCTTCCTCAGTATTTGATGCAAAACGAAGAGAAGGTGAGCGTTGAGCAGGCTGTAGATACACTAAAACAAGCTGTTGGTTCAGAAGATGAAATGGCTGCTCTTGAAAAGAAGTTAGCTCCTGCAGACAACAATGTTCCAGATAAGGATAAACCTAGAACTGTTGGCTTTGTCAGCGCTGGAGTGGAATCACGGGGTGATGATGGGAGGAGAAATGTAAATCAGGAAGAGATCGAACTGCCAGAGGATAGCGATGAGGAAGATGATGAGAAGGTTGAAATTAAACAGAAAGATGTGCCAAGTGCTGTTTTTGGTGGCTTAGCCCAGAAGCGCGATGAACCGGAAAAAGATGATCAGGACAAAGGAACAGATGCTCCTCTGGGTGCTTTAGAACGGTTGAAACGTCGGAAGAAAGGTTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_87436.p1 GENE.R_Transcript_87436~~R_Transcript_87436.p1 ORF type:complete len:957 (+),score=196.88,Suf|PF05843.10|0.26,Suf|PF05843.10|38,Suf|PF05843.10|6.3,Suf|PF05843.10|0.00066,Suf|PF05843.10|2.6,TPR_14|PF13428.2|3.6e+02,TPR_14|PF13428.2|1.1e+04,TPR_14|PF13428.2|1.8e+03,TPR_14|PF13428.2|45,TPR_14|PF13428.2|1.2e+02,TPR_14|PF13428.2|1e+02,TPR_14|PF13428.2|26,TPR_14|PF13428.2|34,TPR_14|PF13428.2|1.7e+02,TPR_14|PF13428.2|1.4,TPR_14|PF13428.2|1.9e+02,TPR_12|PF13424.2|29,TPR_12|PF13424.2|0.14,TPR_12|PF13424.2|0.41,TPR_12|PF13424.2|1.3e+02,TPR_12|PF13424.2|1.6e+03,Mad3_BUB1_I|PF08311.8|2.8e+02,Mad3_BUB1_I|PF08311.8|14,Mad3_BUB1_I|PF08311.8|4.5e+02,Mad3_BUB1_I|PF08311.8|1,Mad3_BUB1_I|PF08311.8|3.1,Mad3_BUB1_I|PF08311.8|7.5e+02 R_Transcript_87436:133-2871(+)
MSIPKELYPSQDDLLYEEELLRNPFSLRLWWRYLVARTDSPFKKRAIIYERALKALPGSYKLWYAYLRERLELVRNLPITHSQYQTLNNTFERALVTMHKMPRIWIMYLQTLTEQKLVTRTRLTFDRALCALPVTQHDRIWEPYLVFVSQRGVPIETSLRVYRRYLKYDPSHIEDFIEFLVSSERWQEAAERLAGVLNDDQFFSIKGKTKHRLWLELCDLLTKHATEVSGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIRRKLPEKARDVFEEGMMSVVTVRDFSVIFDAYSQFEESMLAFNMENLNLSDEEGVENGGVEDGEEEEEDVRKAVELSLGKFERKILKGFWLHDDNDVDLRLARLENLMDRRPELANSVLLRQNPHNVEQWHRRVKLFEGNPTRQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYENHKDLANARVIFDKAVQVNYKSVDHLASVWCEWAEMELRHKNFRGALDLMRRATAEPSVEVKRRVAADGHEPVQMKLHKSLRLWAFYVDLEESLGNLESTRAVYERIFDLRIATPQIVTNYAMLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPAECVKPLYLQYAKLEEDFGLAKRAMKVYDQATKAVPASEKLSMYEIYVARATEIFGVPKTRDIYEQAIQSGLPDKDVKTMCMKYAELEKSLGEIDRARAIYTYASQFADPRTDPDIWNRWHDFEVQHGNEDTFREMLHIKRTVSASFSQTQFILPQYLMQNEEKVSVEQAVDTLKQAVGSEDEMAALEKKLAPADNNVPDKDKPRTVGFVSAGVESRGDDGRRNVNQEEIELPEDSDEEDDEKVEIKQKDVPSAVFGGLAQKRDEPEKDDQDKGTDAPLGALERLKRRKKG*

Click here to download the sequence:
Link to NCBI Protein BLAST