Transcript Information: R_Transcript_87471.p1


Annotated TAIR IDAT5G53110.1
Annotated Gene NameRING/U-box superfamily protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:21529022-21533008 | Forward length=382
E-Value7E-75
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 19.6688811258846
Replicate 25.1541305931481
Replicate 38.9969615364733
Condition 2: 8 Hour
Replicate 113.286903459745
Replicate 225.53878494523
Replicate 328.939389542064
Condition 3: 24 Hour
Replicate 19.5509223867193
Replicate 26.3829173016658
Replicate 311.42459004329


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_87471.p1 GENE.R_Transcript_87471~~R_Transcript_87471.p1 ORF type:complete len:387 (+),score=16.58,zf-RING_2|PF13639.2|7e-15,zf-rbx1|PF12678.3|9.3e+03,zf-rbx1|PF12678.3|3.6e-10,zf-RING_11|PF17123.1|1.9e+03,zf-RING_11|PF17123.1|1.7e-09,zf-C3HC4|PF00097.21|1.6e-07,zf-C3HC4_2|PF13923.2|9e+03,zf-C3HC4_2|PF13923.2|3.6e-07,zf-C3HC4_3|PF13920.2|4.8e-06,zf-ANAPC11|PF12861.3|7.9e+02,zf-ANAPC11|PF12861.3|6.4e-06 R_Transcript_87471:385-1545(+)
ATGCAAAATCTTGTTCACACAACAACTAGCATCATACCGATTATTTTCTCTCTCCTAATAATCCAATCTACAGCCCTCGAAAGTTGCGCCCCTTTCTCGTGCAATCGTCATCGCCGTGACACAATCCAGTTCCCATTTTGGGTGCCCCGAACCCAATCAAACCGGTGCGGATATCCGGGTTTCAACCTCTCATGTGACGGCGACGAAACACTCCTCCACCTCAAAAATTCCAACCCCTTCACTGTACGTGCAATCGATTACCCAGACCAGCTCATTTGGGTCACCGACCCGAACCGTTGTCTCCCAAAACGGGTCCTGGAGTTGAACCTGACCAAAACACCGTTCGTGTCGGGTCCGTCAAACACAGAGTACTCCTTCCTGAACTGCTCAAGTGCGGTGAATAATAATGATTCGGTTTTTGTTCCAGACGGTACGTCGGTAGTTTCTTGCTTAAGTGAGAGGAATTTCACGGTGTTTTTGACATTTGAGAAAGGGTCGGAACAGAAGATGGTGAATGAATGGAAGTGTAAAGTAATTAAGAGGGTGGTTGCTCCCATTTGGTGGCCGGATTTCGGGTACGGGTTTATTCCACCCGATTTGAGTAATGTTTTCTTACAGTTGAGCTGGGATATTCCTGATTGTGGGGATTGTCAACTTCGGGGCGGGTCTTGTGGGTTTGTGTCGGATTCGGGTTTCTCTGTTGGTTGCTTTCTTCCCAACGGCGATGGTGGTCTTTCAAGGAGTGCTGAAGTTGGTGTAATACTGGGAGCTGGAATACCTGGCCTGATATGCATGATTGCACTTACATTTTACATCAGCGGCAAGGTCAGAGCTTCCAGCCGGAATCAACGCCGTGCTATTACCGAATCTTCACCAGCAATCTTCCCACAACCATTTACCATTACATTGGGCCTAGATAGGTGCACCATAGAATCTTACCCCAAGACTGTATTGGGGGAGAGTAAGCGACTCCCAAAGCCTAGTGATGGCACCTGTCCTATATGCTTGTCAGAATATCAGCCCAAGGAGACTTTGAGGTCAATACCAGAATGCAACCACTATTTCCACGCTGAGTGCATAGACGAGTGGCTCAGGATGAATGCAACATGCCCTTTATGCCGGAATTCACCCCAAAGATCTTCTGGGGCAGCTGCCTTGTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_87471.p1 GENE.R_Transcript_87471~~R_Transcript_87471.p1 ORF type:complete len:387 (+),score=16.58,zf-RING_2|PF13639.2|7e-15,zf-rbx1|PF12678.3|9.3e+03,zf-rbx1|PF12678.3|3.6e-10,zf-RING_11|PF17123.1|1.9e+03,zf-RING_11|PF17123.1|1.7e-09,zf-C3HC4|PF00097.21|1.6e-07,zf-C3HC4_2|PF13923.2|9e+03,zf-C3HC4_2|PF13923.2|3.6e-07,zf-C3HC4_3|PF13920.2|4.8e-06,zf-ANAPC11|PF12861.3|7.9e+02,zf-ANAPC11|PF12861.3|6.4e-06 R_Transcript_87471:385-1545(+)
MQNLVHTTTSIIPIIFSLLIIQSTALESCAPFSCNRHRRDTIQFPFWVPRTQSNRCGYPGFNLSCDGDETLLHLKNSNPFTVRAIDYPDQLIWVTDPNRCLPKRVLELNLTKTPFVSGPSNTEYSFLNCSSAVNNNDSVFVPDGTSVVSCLSERNFTVFLTFEKGSEQKMVNEWKCKVIKRVVAPIWWPDFGYGFIPPDLSNVFLQLSWDIPDCGDCQLRGGSCGFVSDSGFSVGCFLPNGDGGLSRSAEVGVILGAGIPGLICMIALTFYISGKVRASSRNQRRAITESSPAIFPQPFTITLGLDRCTIESYPKTVLGESKRLPKPSDGTCPICLSEYQPKETLRSIPECNHYFHAECIDEWLRMNATCPLCRNSPQRSSGAAAL*

Click here to download the sequence:
Link to NCBI Protein BLAST