Transcript Information: R_Transcript_87509.p1


Annotated TAIR IDAT5G58230.1
Annotated Gene NameTransducin/WD40 repeat-like superfamily protein
Annotated Gene Symbol(s)MSI1, MEE70, ATMSI1
Annotation TypeOrtholog
Chromosome Positionchr5:23556112-23557994 | Forward length=424
E-Value6.5e-310
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 137.446355494927
Replicate 220.848785425083
Replicate 331.597349986262
Condition 2: 8 Hour
Replicate 132.284641604916
Replicate 231.368075463396
Replicate 347.015647180674
Condition 3: 24 Hour
Replicate 145.216664820841
Replicate 238.532138483304
Replicate 346.1845946672


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_87509.p1 GENE.R_Transcript_87509~~R_Transcript_87509.p1 ORF type:complete len:427 (+),score=86.11,CAF1C_H4-bd|PF12265.4|1.8e-26,CAF1C_H4-bd|PF12265.4|5.3e+03,CAF1C_H4-bd|PF12265.4|3.4e+03,WD40|PF00400.28|0.44,WD40|PF00400.28|6,WD40|PF00400.28|2.9e-06,WD40|PF00400.28|2.3,WD40|PF00400.28|0.16 R_Transcript_87509:206-1486(+)
ATGGGCAAAGACGAGGAAGAAATGAGGGGGGAAATCGAGGAGAGATTAATCAACGAGGAGTACAAGATATGGAAGAAGAACACTCCCTTTTTGTACGATTTGGTGATAACACATGCACTTGAGTGGCCTTCTCTCACTGTCGAGTGGCTCCCTGACCGTGAGGAGCCACCTGGCAAGGACTACTCCGTACAGAAGATGATTTTGGGGACCCACACTTCGGAAAACGAGCCTAATTATCTTATGTTGGCTCAAGTTCAGCTCCCTCTTGAAGATGCTGAGAATGATGCCCGTCATTATGATGATGATCGGTCCGATTTTGGTGGCTTTGGCTCTGCCAATGGCAAGGTACAAATTATACAACAAATAAATCATGATGGAGAGGTAAATCGAGCTCGCTACATGCCTCAAAACCCCTTTGTAATTGCCACCAAGACAGTGAGCGCAGAAGTATATGTATTTGACTATAGTAAACACCCGTCTAAGCCACCTCTTGATGGTGCGTGCAATCCTGATTTAAGGTTGCGAGGCCATAGCACTGAAGGATATGGTCTGTCATGGAGTAAATTCAAGCAGGGACATTTACTGAGTGGTTCTGATGATGCTCAGATTTGTCTCTGGGACATCAATGCAACACCTCGGAATAAAACGCTGGATGCCATGCAAATATTTAAGGTTCATGAAGGTGTTGTTGAAGATGTGGCATGGCATTTAAGGCACGAGTACTTGTTTGGATCAGTTGGAGATGATCAATATCTGCTTATATGGGACCTTCGAACTCCATCAGTTACCAAGCCTGTCCAGTCTGTGATTGCTCATCAAAGTGAGGTGAACTGCTTGGCTTTCAATCCCTTTAACGAATGGGTTGTGGCAACGGGGTCTACCGACAAGACTGTTAAGTTATTTGATCTAAGAAAAATCAACACTGCACTGCATACTTTTGATTGTCACAAAGAAGAGGTTTTCCAAGTTGGGTGGAATCCTAAGAACGAGACTATCTTGGCCTCTTGCTGTCTTGGTAGGAGACTCATGGTGTGGGATCTTAGCAGGATTGATGAGGAACAGACACCAGAGGATGCTGAAGATGGCCCACCTGAATTGCTCTTTATTCATGGAGGCCACACGAGCAAAATCTCTGACTTCTCATGGAATCCATGTGAAGACTGGGTGGTTGCTAGTGTGGCAGAGGACAACATTCTTCAAATCTGGCAAATGGCTGAGAATATATACCATGATGAGGATGATTTAGCAGGGGATGAGGCCACCGCCATAAAGGGTTCTTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_87509.p1 GENE.R_Transcript_87509~~R_Transcript_87509.p1 ORF type:complete len:427 (+),score=86.11,CAF1C_H4-bd|PF12265.4|1.8e-26,CAF1C_H4-bd|PF12265.4|5.3e+03,CAF1C_H4-bd|PF12265.4|3.4e+03,WD40|PF00400.28|0.44,WD40|PF00400.28|6,WD40|PF00400.28|2.9e-06,WD40|PF00400.28|2.3,WD40|PF00400.28|0.16 R_Transcript_87509:206-1486(+)
MGKDEEEMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLEDAENDARHYDDDRSDFGGFGSANGKVQIIQQINHDGEVNRARYMPQNPFVIATKTVSAEVYVFDYSKHPSKPPLDGACNPDLRLRGHSTEGYGLSWSKFKQGHLLSGSDDAQICLWDINATPRNKTLDAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVTKPVQSVIAHQSEVNCLAFNPFNEWVVATGSTDKTVKLFDLRKINTALHTFDCHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVVASVAEDNILQIWQMAENIYHDEDDLAGDEATAIKGS*

Click here to download the sequence:
Link to NCBI Protein BLAST