Transcript Information: R_Transcript_87714.p1


Annotated TAIR IDAT5G41350.1
Annotated Gene NameRING/U-box superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:16542026-16543092 | Reverse length=212
E-Value7.2E-65
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 127.2056037087
Replicate 215.497269354887
Replicate 321.488701459248
Condition 2: 8 Hour
Replicate 118.42269838888
Replicate 222.573842620625
Replicate 329.301885715768
Condition 3: 24 Hour
Replicate 125.800202408277
Replicate 220.689933340208
Replicate 323.76379366006


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_87714.p1 GENE.R_Transcript_87714~~R_Transcript_87714.p1 ORF type:complete len:210 (+),score=48.49,zf-RING_2|PF13639.2|1.6e+04,zf-RING_2|PF13639.2|6.5e-11,zf-rbx1|PF12678.3|1.6e+04,zf-rbx1|PF12678.3|3.8e-09,zf-C3HC4|PF00097.21|1.6e+04,zf-C3HC4|PF00097.21|1.8e-07,zf-ANAPC11|PF12861.3|7.4e-06,zf-RING_11|PF17123.1|1.6e+04,zf-RING_11|PF17123.1|3e-06,zf-RING_11|PF17123.1|4.1e+03,zf-RING_UBOX|PF13445.2|4.2e-06,zf-RING_UBOX|PF13445.2|1.3e+03,zf-RING_5|PF14634.2|1.6e+04,zf-RING_5|PF14634.2|8.4e-06 R_Transcript_87714:309-938(+)
ATGGGAGGTTGTTGTTGCTGCTGTTCTTCTAGGAGATCTGAACCGATTAGGACTCCAACTTATTATTATTGCCCAAGAACCTCGGAGGAGCGTCTGCCCTTGTCAGCTAACCATGGCGAACCCGCTGGATTTTCAGTGGGGCTTGTGGTTGATACCAATCTGGACACTTCGAACCCAGACACATACACTCCACCTCCTGCTCCTATTCCCTATGATGTTGATTTTGGAAACCATCAATCACGACCTGGAAGTGGAGATAATTGCGGCAACAAGAGTAGCACTGTAGCTGATGCGACAGATGCTGGTTCTGCAGAGAACACTGGTGCTTCCTTAGAAACTCTGGAGGAGGATATAAAGGAAATAGACTGCAAAACGCAATCGATTTTGGAGCTCACACCATCAAAGGATTCTGAAGATGATCTTAAAAAGCCTGTTGATCCAGTTGTCATAATGATAGAAGATGAAGATTGCCCAATATGTCTTGAAGAGTACACAGAGGAGAACCCAAAAATGCTTACCAACTGTGAGCATCATTTTCACCTTTGCTGCATTCTCGAGTGGATGGAAAGGAGTGAAAGTTGTCCTGTGTGTGATAAGGAAGTGGTGATTGATGAACTACTTGATAGTTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_87714.p1 GENE.R_Transcript_87714~~R_Transcript_87714.p1 ORF type:complete len:210 (+),score=48.49,zf-RING_2|PF13639.2|1.6e+04,zf-RING_2|PF13639.2|6.5e-11,zf-rbx1|PF12678.3|1.6e+04,zf-rbx1|PF12678.3|3.8e-09,zf-C3HC4|PF00097.21|1.6e+04,zf-C3HC4|PF00097.21|1.8e-07,zf-ANAPC11|PF12861.3|7.4e-06,zf-RING_11|PF17123.1|1.6e+04,zf-RING_11|PF17123.1|3e-06,zf-RING_11|PF17123.1|4.1e+03,zf-RING_UBOX|PF13445.2|4.2e-06,zf-RING_UBOX|PF13445.2|1.3e+03,zf-RING_5|PF14634.2|1.6e+04,zf-RING_5|PF14634.2|8.4e-06 R_Transcript_87714:309-938(+)
MGGCCCCCSSRRSEPIRTPTYYYCPRTSEERLPLSANHGEPAGFSVGLVVDTNLDTSNPDTYTPPPAPIPYDVDFGNHQSRPGSGDNCGNKSSTVADATDAGSAENTGASLETLEEDIKEIDCKTQSILELTPSKDSEDDLKKPVDPVVIMIEDEDCPICLEEYTEENPKMLTNCEHHFHLCCILEWMERSESCPVCDKEVVIDELLDS*

Click here to download the sequence:
Link to NCBI Protein BLAST