Transcript Information: R_Transcript_88008.p1


Annotated TAIR IDAT4G28600.1
Annotated Gene Nameno pollen germination related 2
Annotated Gene Symbol(s)NPGR2
Annotation TypeOrtholog
Chromosome Positionchr4:14130046-14132599 | Forward length=739
E-Value1.7E-258
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 15.7278171745927
Replicate 24.4562460518966
Replicate 34.4143192242585
Condition 2: 8 Hour
Replicate 14.9418086807591
Replicate 25.32817887622
Replicate 36.2868859700819
Condition 3: 24 Hour
Replicate 16.3970973264696
Replicate 23.5897231267216
Replicate 35.7854219419794


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_88008.p1 GENE.R_Transcript_88008~~R_Transcript_88008.p1 ORF type:complete len:768 (+),score=162.43,TPR_12|PF13424.2|3.3e+02,TPR_12|PF13424.2|3.1e+02,TPR_12|PF13424.2|1.5e+03,TPR_12|PF13424.2|12,TPR_12|PF13424.2|26,TPR_12|PF13424.2|1.2e-05,TPR_12|PF13424.2|0.048,TPR_12|PF13424.2|0.26,TPR_11|PF13414.2|1.5e+03,TPR_11|PF13414.2|47,TPR_11|PF13414.2|7.4e+02,TPR_11|PF13414.2|12,TPR_11|PF13414.2|53,TPR_11|PF13414.2|0.57,TPR_11|PF13414.2|0.00085,TPR_11|PF13414.2|0.00041,TPR_11|PF13414.2|0.026,TPR_11|PF13414.2|2.7,TPR_2|PF07719.13|80,TPR_2|PF07719.13|5.9,TPR_2|PF07719.13|4.4e+02,TPR_2|PF07719.13|30,TPR_2|PF07719.13|2.1e+02,TPR_2|PF07719.13|0.41,TPR_2|PF07719.13|3.6e+02,TPR_2|PF07719.13|0.35,TPR_2|PF07719.13|25,TPR_2|PF07719.13|2e+02,TPR_2|PF07719.13|4.4e+03,TPR_2|PF07719.13|1.5e+02,TPR_8|PF13181.2|2.8e+03,TPR_8|PF13181.2|58,TPR_8|PF13181.2|14,TPR_8|PF13181.2|49,TPR_8|PF13181.2|2.2e+03,TPR_8|PF13181.2|8.9e+02,TPR_8|PF13181.2|4.9e+02,TPR_8|PF13181.2|1.3,TPR_8|PF13181.2|7.9e+02,TPR_8|PF13181.2|4e+02,TPR_8|PF13181.2|0.14,TPR_8|PF13181.2|42,TPR_8|PF13181.2|2e+03,TPR_19|PF14559.2|9.9,TPR_19|PF14559.2|94,TPR_19|PF14559.2|6.6e+03,TPR_19|PF14559.2|1.3e+03,TPR_19|PF14559.2|7.6e-07,TPR_19|PF14559.2|1.4e+02,TPR_19|PF14559.2|20,TPR_19|PF14559.2|1.3e+02,TPR_14|PF13428.2|11,TPR_14|PF13428.2|3e+02,TPR_14|PF13428.2|6.6e+03,TPR_14|PF13428.2|4.1e+02,TPR_14|PF13428.2|1.1e+04,TPR_14|PF13428.2|0.018,TPR_14|PF13428.2|8.2e+02,TPR_14|PF13428.2|0.33,TPR_14|PF13428.2|7.4e+03,TPR_14|PF13428.2|26,TPR_1|PF00515.24|4e+03,TPR_1|PF00515.24|13,TPR_1|PF00515.24|1.8e+02,TPR_1|PF00515.24|1.7e+02,TPR_1|PF00515.24|5.2e+03,TPR_1|PF00515.24|3.2,TPR_1|PF00515.24|9.7e+02,TPR_1|PF00515.24|0.56,TPR_1|PF00515.24|4.3,TPR_1|PF00515.24|2.7e+03,TPR_1|PF00515.24|1.3e+03,TPR_1|PF00515.24|7e+02,TPR_16|PF13432.2|5.8,TPR_16|PF13432.2|47,TPR_16|PF13432.2|1.1e+04,TPR_16|PF13432.2|1.8e+03,TPR_16|PF13432.2|0.0015,TPR_16|PF13432.2|9.3e+03,TPR_16|PF13432.2|3e+02,TPR_16|PF13432.2|2e+03,TPR_17|PF13431.2|1.4e+03,TPR_17|PF13431.2|8.7e+02,TPR_17|PF13431.2|1.2e+04,TPR_17|PF13431.2|51,TPR_17|PF13431.2|1.7e+03,TPR_17|PF13431.2|4.1e+02,TPR_17|PF13431.2|1.2e+04,TPR_17|PF13431.2|0.1,TPR_17|PF13431.2|6.1 R_Transcript_88008:533-2836(+)
ATGGTGTATATCATCCTAGGACAGTTTTATAAGTCCCTATCAAATAGATCTTCTGACATCTTGTGTTTTCTGCATCGGGGTATGAAAGAAGTACTTTTCAGTGTTATGACAGCTAAACACCAAACAAGAAGGCGGGTATCAGGTTTTAGACTCAGGTTGAAGAAGATGATGAAGTGCATTTTTTTAGGCAAACAAGTGAGAGTAGATGAAGCAGTTGAATCATCAGAGTCGTCCTTGGCTACCCGGGATTATTCAGCCAGTGGCCATATGGCTCGAGTGGACGAAGTTGATAGAAAGACGAATACTAGTACCATCGAGGAAGCTGAATCAACTCTTCGTGAAAGTGGTTACCTGAACTATGAGGAAGCTAGAGCACTGTTGGGAAGGCTGGAGTACCAGAAAGGAAACGTGGAAGCAGCTTTTCGCGTTTTTGAAGGCATAGACATTGAGGCCATAACACCAAATATTAAAGTTTCACTGGCCAGAAGATGTGAGCCTCAAAGACGTCATTCTCAGAGTGATGTTGTGCCTCCAATGTCAATGCATGCTATTAGTCTTCTCTTCGAAGCAATTTTTCTTAAAGCCAAGTCATTGCAGACTCTTGGAAGGTTTGAAGAAGCTGCTCAATCATGCCAGGTGATTCTGGATACAGTTGAATCTGCATTACCAGAGGGTTTGAATGAAAGGATGGCCTCCAACTGCAAATTGCAGGAGATTTTGAACAACGCAGTTGAGTTGCTACCTGAGTTGTGGAAACTTGCTGGGTCTTCCAATGAAGCTATTTCATCATATCGGCGTGCATTACTCTATAGTTGGAATCTTGAACTGCAAACGCAAACGAGGATCGAGAAAGAGTTTGCAATTTTCCTTCTATACAGTGGCATTGAAGCAAGTCCCCTAACTCTCCGTTTCCAAGCAGAAGGAGCATACATTCCTAAAAACAATATAGAAGAGGCAATTCTTCTGTTGTTGCTCTTGCTTAGGAAATTTCTGCAAAGAAGAATCGACTGGGATCCATCAATCATGGATCATCTTTCCTTTGCACTATCTGTTTCAGGAGATTTAGGGACCCTGGCCTGTCAATTAGAAGCATTGCCTGCGGAGACAATGAATACCAAAGAGAAATATAGGACCCTGGCTCTGTGTTATCATGGAGAAGGTGAACATCAAATTGCCTTGAATCTGTTGAGGAACCTTCTCAGTGAGCGAGAAAACCAGAACTGTACACAAGAGTTGTTACTTGCTTCAAAACTCTGTACTGAAGACACAAGGTCATCTGAAGAAGGGATCACTTACGCTCATAAGGCAATTGAGACACTGGAAGGGCAATGTGAACAGCTGGCAGGTAGTGCCAACTGCTTCCTGGGCATTGTATCATCAATGCATTCCAGATTTAGTGCTTCTGACTCCAATAGGGTACTGCTGCAATCTGAAGCCCTAAATGCATTGGGGACTGCTGAAGAACTCACAAAAGGAACAGACCCGAATGTAATATACCATATTTCCTTGGAAAATGCTGAGCAGAGGAAGTTGGATACAGCACTCTCTTATGCAAAGCAGCTGCTGAAACTTAAGGCTGGATCGGGTACCAGAGCATGGATTCTTATAGCTCGAATATTGTCTGCTCAGAAGCGCTACGATGATGCAGAAACTATAGTCAATGCTGCGCTAGAGCAGACTGGTAAGTGGGAACATGCTGAACTGTTGAGGACCAAGGCTAAACTCCAAATTGCTCAGGGACTGACGAAGAATGCTATACAGACATACACCCAACTTCTTGCAGTTCTCCAAGTTCGGAAGAAGAGCTTTGGTGTTGGGAAGAAGCTTCTAGAGAGAAGGGACCAAGATAGAAACTTGGAGATGGAGACATGGCATGACCTTGCCAATGTGTACATATGCCTGTCACAATGGCGAGATGCTGAGGTCTGCCTTTCAAAGTCAGAAAGTTTATGTCCTGATTCGGCTTCTAGATGTCATTCCAGAGGTTTACTCTATCAGGCAAAGGGTCTTGACATAGAAGCTCAGCACTCTTTCTGGGAAGCGTTGGACAAGGACCCGAACCATGTCCCGAGCTTGATTTCCATGGCTAAAATTCTCATGCATCTGGGAGATCAATCCTTGCCTGTTGCAAGAAGTTGTGTCAGACAAGCTATTCGTCTCGACAGGACTAATGACGTTGCTTGGTACACTCTTGGGCTGCTTCACAAATCAGAAGCTACTGGCGCATCAATTTTGGAAGCTGCTGAATGTTTCCAGGCTGCAGTTCTTCTCGAAGAGACTGCCCCTGTTGAGCCCTTCAGATAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_88008.p1 GENE.R_Transcript_88008~~R_Transcript_88008.p1 ORF type:complete len:768 (+),score=162.43,TPR_12|PF13424.2|3.3e+02,TPR_12|PF13424.2|3.1e+02,TPR_12|PF13424.2|1.5e+03,TPR_12|PF13424.2|12,TPR_12|PF13424.2|26,TPR_12|PF13424.2|1.2e-05,TPR_12|PF13424.2|0.048,TPR_12|PF13424.2|0.26,TPR_11|PF13414.2|1.5e+03,TPR_11|PF13414.2|47,TPR_11|PF13414.2|7.4e+02,TPR_11|PF13414.2|12,TPR_11|PF13414.2|53,TPR_11|PF13414.2|0.57,TPR_11|PF13414.2|0.00085,TPR_11|PF13414.2|0.00041,TPR_11|PF13414.2|0.026,TPR_11|PF13414.2|2.7,TPR_2|PF07719.13|80,TPR_2|PF07719.13|5.9,TPR_2|PF07719.13|4.4e+02,TPR_2|PF07719.13|30,TPR_2|PF07719.13|2.1e+02,TPR_2|PF07719.13|0.41,TPR_2|PF07719.13|3.6e+02,TPR_2|PF07719.13|0.35,TPR_2|PF07719.13|25,TPR_2|PF07719.13|2e+02,TPR_2|PF07719.13|4.4e+03,TPR_2|PF07719.13|1.5e+02,TPR_8|PF13181.2|2.8e+03,TPR_8|PF13181.2|58,TPR_8|PF13181.2|14,TPR_8|PF13181.2|49,TPR_8|PF13181.2|2.2e+03,TPR_8|PF13181.2|8.9e+02,TPR_8|PF13181.2|4.9e+02,TPR_8|PF13181.2|1.3,TPR_8|PF13181.2|7.9e+02,TPR_8|PF13181.2|4e+02,TPR_8|PF13181.2|0.14,TPR_8|PF13181.2|42,TPR_8|PF13181.2|2e+03,TPR_19|PF14559.2|9.9,TPR_19|PF14559.2|94,TPR_19|PF14559.2|6.6e+03,TPR_19|PF14559.2|1.3e+03,TPR_19|PF14559.2|7.6e-07,TPR_19|PF14559.2|1.4e+02,TPR_19|PF14559.2|20,TPR_19|PF14559.2|1.3e+02,TPR_14|PF13428.2|11,TPR_14|PF13428.2|3e+02,TPR_14|PF13428.2|6.6e+03,TPR_14|PF13428.2|4.1e+02,TPR_14|PF13428.2|1.1e+04,TPR_14|PF13428.2|0.018,TPR_14|PF13428.2|8.2e+02,TPR_14|PF13428.2|0.33,TPR_14|PF13428.2|7.4e+03,TPR_14|PF13428.2|26,TPR_1|PF00515.24|4e+03,TPR_1|PF00515.24|13,TPR_1|PF00515.24|1.8e+02,TPR_1|PF00515.24|1.7e+02,TPR_1|PF00515.24|5.2e+03,TPR_1|PF00515.24|3.2,TPR_1|PF00515.24|9.7e+02,TPR_1|PF00515.24|0.56,TPR_1|PF00515.24|4.3,TPR_1|PF00515.24|2.7e+03,TPR_1|PF00515.24|1.3e+03,TPR_1|PF00515.24|7e+02,TPR_16|PF13432.2|5.8,TPR_16|PF13432.2|47,TPR_16|PF13432.2|1.1e+04,TPR_16|PF13432.2|1.8e+03,TPR_16|PF13432.2|0.0015,TPR_16|PF13432.2|9.3e+03,TPR_16|PF13432.2|3e+02,TPR_16|PF13432.2|2e+03,TPR_17|PF13431.2|1.4e+03,TPR_17|PF13431.2|8.7e+02,TPR_17|PF13431.2|1.2e+04,TPR_17|PF13431.2|51,TPR_17|PF13431.2|1.7e+03,TPR_17|PF13431.2|4.1e+02,TPR_17|PF13431.2|1.2e+04,TPR_17|PF13431.2|0.1,TPR_17|PF13431.2|6.1 R_Transcript_88008:533-2836(+)
MVYIILGQFYKSLSNRSSDILCFLHRGMKEVLFSVMTAKHQTRRRVSGFRLRLKKMMKCIFLGKQVRVDEAVESSESSLATRDYSASGHMARVDEVDRKTNTSTIEEAESTLRESGYLNYEEARALLGRLEYQKGNVEAAFRVFEGIDIEAITPNIKVSLARRCEPQRRHSQSDVVPPMSMHAISLLFEAIFLKAKSLQTLGRFEEAAQSCQVILDTVESALPEGLNERMASNCKLQEILNNAVELLPELWKLAGSSNEAISSYRRALLYSWNLELQTQTRIEKEFAIFLLYSGIEASPLTLRFQAEGAYIPKNNIEEAILLLLLLLRKFLQRRIDWDPSIMDHLSFALSVSGDLGTLACQLEALPAETMNTKEKYRTLALCYHGEGEHQIALNLLRNLLSERENQNCTQELLLASKLCTEDTRSSEEGITYAHKAIETLEGQCEQLAGSANCFLGIVSSMHSRFSASDSNRVLLQSEALNALGTAEELTKGTDPNVIYHISLENAEQRKLDTALSYAKQLLKLKAGSGTRAWILIARILSAQKRYDDAETIVNAALEQTGKWEHAELLRTKAKLQIAQGLTKNAIQTYTQLLAVLQVRKKSFGVGKKLLERRDQDRNLEMETWHDLANVYICLSQWRDAEVCLSKSESLCPDSASRCHSRGLLYQAKGLDIEAQHSFWEALDKDPNHVPSLISMAKILMHLGDQSLPVARSCVRQAIRLDRTNDVAWYTLGLLHKSEATGASILEAAECFQAAVLLEETAPVEPFR*

Click here to download the sequence:
Link to NCBI Protein BLAST