Transcript Information: R_Transcript_88144.p1


Annotated TAIR IDAT5G41770.1
Annotated Gene Namecrooked neck protein, putative / cell cycle protein, putative
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:16718021-16720936 | Forward length=705
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 143.962450639876
Replicate 221.026082402704
Replicate 333.759007606245
Condition 2: 8 Hour
Replicate 132.856210269637
Replicate 237.680464719615
Replicate 346.08706809999
Condition 3: 24 Hour
Replicate 144.09201558342
Replicate 231.84716815689
Replicate 341.384837372531


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_88144.p1 GENE.R_Transcript_88144~~R_Transcript_88144.p1 ORF type:complete len:705 (+),score=164.42,HAT|PF02184.12|15,HAT|PF02184.12|0.0078,HAT|PF02184.12|20,HAT|PF02184.12|0.04,HAT|PF02184.12|3.8e-13,HAT|PF02184.12|4,HAT|PF02184.12|3.6e+03,HAT|PF02184.12|8.2,HAT|PF02184.12|1e+03,HAT|PF02184.12|4.4e+03,HAT|PF02184.12|42,HAT|PF02184.12|2.2e+02,HAT|PF02184.12|4.1e+02,HAT|PF02184.12|0.42,HAT|PF02184.12|11,HAT|PF02184.12|0.073,HAT|PF02184.12|3e+03,Suf|PF05843.10|9.5e-06,Suf|PF05843.10|0.003,Suf|PF05843.10|3.7,Suf|PF05843.10|0.31,Suf|PF05843.10|53,TPR_14|PF13428.2|1.6e+04,TPR_14|PF13428.2|0.071,TPR_14|PF13428.2|5.1,TPR_14|PF13428.2|2.3,TPR_14|PF13428.2|32,TPR_14|PF13428.2|0.014,TPR_14|PF13428.2|1.6e+04,TPR_14|PF13428.2|10,TPR_14|PF13428.2|2.7e+03,TPR_14|PF13428.2|20,TPR_14|PF13428.2|5.4,TPR_14|PF13428.2|25,TPR_14|PF13428.2|3.7e+02,TPR_14|PF13428.2|9.5e+03,TPR_19|PF14559.2|37,TPR_19|PF14559.2|25,TPR_19|PF14559.2|87,TPR_19|PF14559.2|5.6,TPR_19|PF14559.2|1.7,TPR_19|PF14559.2|1.1,TPR_16|PF13432.2|0.13,TPR_16|PF13432.2|3.7,TPR_16|PF13432.2|2.3e+02,TPR_16|PF13432.2|0.56,TPR_16|PF13432.2|6e+02,TPR_16|PF13432.2|3.2e+02,TPR_16|PF13432.2|2.3,TPR_16|PF13432.2|1.2e+03,TPR_16|PF13432.2|7.3e+03,TPR_16|PF13432.2|6.4e+03,TPR_2|PF07719.13|1.2,TPR_2|PF07719.13|1.3e+02,TPR_2|PF07719.13|1e+03,TPR_2|PF07719.13|0.39,TPR_2|PF07719.13|3e+03,TPR_2|PF07719.13|7.1e+02,TPR_2|PF07719.13|3.4e+03,TPR_2|PF07719.13|0.61,TPR_2|PF07719.13|5.6e+02,TPR_2|PF07719.13|2.7e+03,TPR_17|PF13431.2|7.3e+02,TPR_17|PF13431.2|2.4e+03,TPR_17|PF13431.2|61,TPR_17|PF13431.2|1.4e+04,TPR_17|PF13431.2|32,TPR_17|PF13431.2|1.6e+04,TPR_17|PF13431.2|0.11,TPR_17|PF13431.2|9.2e+03 R_Transcript_88144:221-2335(+)
ATGGGTACATACAAGGAATCCGACCCTACATTAGGGTACCTCACAAAGAAAGAAACAGAAGTGAAACTCCCTCGACCCACTCGAGTCAAGAACAAGACTCCTGCTCCCATTCAGATTACTGCTGAGCAGATTCTTCGTGAAGCTCGTGAACGCCAAGAATCTGAAATCCGCCCTCCCAAACAGAAGATTACTGATTCCACTGAGTTAGGAGAGTACCGTCTCCGAAAACGCAAGGAGTTTGAGGATTTAATTCGTAGAGTTCGTTGGAACACGAGTGTTTGGACAAAATATGCAAAATGGGAGGAGTCCCAGAATGATTTTAAGCGTGCTCGGTCTGTTTGGGAACGTGCGCTGGAGGTGGATTATAGGAACCATACCTTGTGGCTTAAGTATGCTGAGATGGAGATGAAGAACAAGTTTATAAACCATGCTCGTAATGTGTGGGATCGTGCAGTCTCGTTGCTGCCTAGAGTTGATCAGCTGTGGTATAAATATATTCATATGGAAGAGATGCTTGGGAATGTGGCTGGTGCGAGGCAGGTTTTCGAGAGATGGATGCAGTGGCAGCCTGACCAGCAAGGGTGGCTCTCTTATATTAAGTTTGAGTTGCGATACAATGAGATTGATAGAACAAGGGCAATTTATGAGCGGTTTGTGCAGTGTCATCCAAAAGTTGGGGCATGGATTCGTTTTGCGAAGTTTGAGATGAAAAATGGGGAGATTGCTCGAGCTAGGAATTGTTATGAAAGAGCTGTTGACAAGTTGGCAGATGATGAAGAGGCTGAGCTGTTGTTTGTGGCGTTTGCTGAGTTTGAGGAAAAATGCAAGGAGACAGAGCGTGCAAGATGTATCTATAAATTTGCCTTGGACCATATACCTAAAGGGCGAGCCGAAGAGGTTTACAAGAAGTATGTTGCATTTGAGAAGCAGTATGGAGATAGGGAGGGCATTGATGATGCAATTGTAGGGAAAAGGAGATTTCAATATGAGGACGAGGTCCGAAAGAACCCTCTTAACTATGACACATGGTTTGATTACATTCGGTTAGAGGAGAGTGTAGGTATGAAAGAGCGAGTAAGAGAAGTATATGAACGTGCAATAGCCAATATTCCTCCTGCTGAGGAGAAGCGCTACTGGCAGCGTTACATTTACTTGTGGATTAATTATGCTTTATATGAAGAACTTGATGCACAAGACATGGAGCGAACAAGAGAAGTATACAGGGAATGTCTGAAGTTGATACCACATGACAAGTTTTCCTTTGCAAAAATCTGGCTTTTGGCAGCGCAGTTTGAGATACGACAGTTGAATCTCCAAGGGGCACGGCAGATATTAGGCAATGCAATTGGGAGGGCCCCAAAAGATAAGATCTTCAAGAAGTACATTGAAATAGAGTTGCAGTTAGGAAACATAGATCGCTGTCGAAAACTCTATGAGAAGTATCTAGAGTGGTCACCGGAGAACTGCTATGCATGGACTAAGTACGCGGAGTTGGAGAGATCTCTGTGTGAAACAGAACGGGCTAGGGCTATTTATGAGCTTGCCATTGCCCAGCCTGCTTTAGATATGCCAGAATTATTGTGGAAGGCATACATTGATTTTGAGATAGGAGAGGGTGAATTTGAATATACAAGAGCATTATATGAGAGGCTTCTTGATAGGACAAAGCACTTAAAGGTATGGATCAGCTATGCAAAATTTGAAGCTTCCGCTATTGAGGACCATGGGGGCTCTGACATGCCAGAGGATGAGATTCAAGAGCTGCTTTATGAAAAGAAGAATTTGTGTGTTCAGTTTGCTAGACGGATATTTGAAAGGGCCCTTACTCACTTCAGGGTTTCTGCTCCTGAGCTGAAAGAGGAGAGGGCGATGCTCTTAGAAGAGTGGCTGAACTTAGAGAAAGACTTCGGGGAGCTTGGAGATGTTGATTTAGTGCAAGCCAAGATGCCACGTAAGCTAAAGAGGCGTCGGCCACTAATGACAGAAGATGGCCCAGCCGGGTTTGAGGAATACTTTGACTACATGTTCCCTGAGGAAACGCAGCAAAACAATCTTAAGATATTGGAGGCTGCATTGAAATGGAAGAAGCAAAAGCTTGATGGTGAGGACGATTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_88144.p1 GENE.R_Transcript_88144~~R_Transcript_88144.p1 ORF type:complete len:705 (+),score=164.42,HAT|PF02184.12|15,HAT|PF02184.12|0.0078,HAT|PF02184.12|20,HAT|PF02184.12|0.04,HAT|PF02184.12|3.8e-13,HAT|PF02184.12|4,HAT|PF02184.12|3.6e+03,HAT|PF02184.12|8.2,HAT|PF02184.12|1e+03,HAT|PF02184.12|4.4e+03,HAT|PF02184.12|42,HAT|PF02184.12|2.2e+02,HAT|PF02184.12|4.1e+02,HAT|PF02184.12|0.42,HAT|PF02184.12|11,HAT|PF02184.12|0.073,HAT|PF02184.12|3e+03,Suf|PF05843.10|9.5e-06,Suf|PF05843.10|0.003,Suf|PF05843.10|3.7,Suf|PF05843.10|0.31,Suf|PF05843.10|53,TPR_14|PF13428.2|1.6e+04,TPR_14|PF13428.2|0.071,TPR_14|PF13428.2|5.1,TPR_14|PF13428.2|2.3,TPR_14|PF13428.2|32,TPR_14|PF13428.2|0.014,TPR_14|PF13428.2|1.6e+04,TPR_14|PF13428.2|10,TPR_14|PF13428.2|2.7e+03,TPR_14|PF13428.2|20,TPR_14|PF13428.2|5.4,TPR_14|PF13428.2|25,TPR_14|PF13428.2|3.7e+02,TPR_14|PF13428.2|9.5e+03,TPR_19|PF14559.2|37,TPR_19|PF14559.2|25,TPR_19|PF14559.2|87,TPR_19|PF14559.2|5.6,TPR_19|PF14559.2|1.7,TPR_19|PF14559.2|1.1,TPR_16|PF13432.2|0.13,TPR_16|PF13432.2|3.7,TPR_16|PF13432.2|2.3e+02,TPR_16|PF13432.2|0.56,TPR_16|PF13432.2|6e+02,TPR_16|PF13432.2|3.2e+02,TPR_16|PF13432.2|2.3,TPR_16|PF13432.2|1.2e+03,TPR_16|PF13432.2|7.3e+03,TPR_16|PF13432.2|6.4e+03,TPR_2|PF07719.13|1.2,TPR_2|PF07719.13|1.3e+02,TPR_2|PF07719.13|1e+03,TPR_2|PF07719.13|0.39,TPR_2|PF07719.13|3e+03,TPR_2|PF07719.13|7.1e+02,TPR_2|PF07719.13|3.4e+03,TPR_2|PF07719.13|0.61,TPR_2|PF07719.13|5.6e+02,TPR_2|PF07719.13|2.7e+03,TPR_17|PF13431.2|7.3e+02,TPR_17|PF13431.2|2.4e+03,TPR_17|PF13431.2|61,TPR_17|PF13431.2|1.4e+04,TPR_17|PF13431.2|32,TPR_17|PF13431.2|1.6e+04,TPR_17|PF13431.2|0.11,TPR_17|PF13431.2|9.2e+03 R_Transcript_88144:221-2335(+)
MGTYKESDPTLGYLTKKETEVKLPRPTRVKNKTPAPIQITAEQILREARERQESEIRPPKQKITDSTELGEYRLRKRKEFEDLIRRVRWNTSVWTKYAKWEESQNDFKRARSVWERALEVDYRNHTLWLKYAEMEMKNKFINHARNVWDRAVSLLPRVDQLWYKYIHMEEMLGNVAGARQVFERWMQWQPDQQGWLSYIKFELRYNEIDRTRAIYERFVQCHPKVGAWIRFAKFEMKNGEIARARNCYERAVDKLADDEEAELLFVAFAEFEEKCKETERARCIYKFALDHIPKGRAEEVYKKYVAFEKQYGDREGIDDAIVGKRRFQYEDEVRKNPLNYDTWFDYIRLEESVGMKERVREVYERAIANIPPAEEKRYWQRYIYLWINYALYEELDAQDMERTREVYRECLKLIPHDKFSFAKIWLLAAQFEIRQLNLQGARQILGNAIGRAPKDKIFKKYIEIELQLGNIDRCRKLYEKYLEWSPENCYAWTKYAELERSLCETERARAIYELAIAQPALDMPELLWKAYIDFEIGEGEFEYTRALYERLLDRTKHLKVWISYAKFEASAIEDHGGSDMPEDEIQELLYEKKNLCVQFARRIFERALTHFRVSAPELKEERAMLLEEWLNLEKDFGELGDVDLVQAKMPRKLKRRRPLMTEDGPAGFEEYFDYMFPEETQQNNLKILEAALKWKKQKLDGEDD*

Click here to download the sequence:
Link to NCBI Protein BLAST