Transcript Information: R_Transcript_88257.p2


Annotated TAIR IDAT2G15680.1
Annotated Gene NameCalcium-binding EF-hand family protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr2:6831024-6831587 | Forward length=187
E-Value3.3E-61
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 111.606502346207
Replicate 213.465018745235
Replicate 313.569752162938
Condition 2: 8 Hour
Replicate 114.904439533106
Replicate 218.95813895231
Replicate 319.927311659338
Condition 3: 24 Hour
Replicate 117.966979569508
Replicate 222.175124428026
Replicate 318.319057183599


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_88257.p2 GENE.R_Transcript_88257~~R_Transcript_88257.p2 ORF type:complete len:184 (+),score=28.53,EF-hand_1|PF00036.28|1.5e-07,EF-hand_1|PF00036.28|1.3e-07,EF-hand_1|PF00036.28|1.1e-06,EF-hand_1|PF00036.28|6.2e-07,EF-hand_5|PF13202.2|2.1e-06,EF-hand_5|PF13202.2|6.6e-07,EF-hand_5|PF13202.2|2.5e-07,EF-hand_5|PF13202.2|1.7e-05,EF-hand_6|PF13405.2|5.8e-08,EF-hand_6|PF13405.2|3.5e-05,EF-hand_6|PF13405.2|2.9e-07,EF-hand_6|PF13405.2|0.0071,EF-hand_8|PF13833.2|5e-05,EF-hand_8|PF13833.2|7.1e-06,EF-hand_8|PF13833.2|0.00039,EF-hand_8|PF13833.2|1.1e-08,EF-hand_7|PF13499.2|1.9e-13,EF-hand_7|PF13499.2|5.3e-10,SPARC_Ca_bdg|PF10591.5|2.2e-06,SPARC_Ca_bdg|PF10591.5|0.017,EF-hand_4|PF12763.3|6.2e-06,EF-hand_4|PF12763.3|0.43,EF-hand_9|PF14658.2|1.3,EF-hand_9|PF14658.2|0.0042 R_Transcript_88257:553-1104(+)
ATGGCTAGTGTACGGTTCCTCGATTTCCAGTACAGCCTATCAAAGAGGAAGCTCAACACAAAGCCATCACGTCTGTTTTCCTTTAGCAACAAGCAGTACTCCAACTTGCTACCAATTTTCCAGCCAAATGCTGATGAAATGAGGCGAGTGTTCGACAAGTTCGATTCCAACAAAGATGGGAAGATTTCGCAAGATGAGTACAGGTCGATTCTCCGAGCCATGGGCAAGCCTGACAACATGGTAAGGCAGATATTCAAAGTTGCTGATTTGAACAAAGATGGGTACATAGACTTCAAGGAGTTCATGACGTTGCACAACGATGGAGGGGGTGTACGGACTATGGACATAAGAAACGCTTTTCGAGCATTCGATTTGGATGAAGATGGAAAGATTAGTGCTGAGGAAGTGTACCAGGTGCTAAGAAGGCTTGGAGAGAATTGTAACCTTGATGAATGCCGTAGGATGGTGAGTGCAGTCGATATGAATGGAGATGGGTATATAAACATGGACGAGTTTATGACAATGATGACTCGTAGTATGGTTCGTTACTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_88257.p2 GENE.R_Transcript_88257~~R_Transcript_88257.p2 ORF type:complete len:184 (+),score=28.53,EF-hand_1|PF00036.28|1.5e-07,EF-hand_1|PF00036.28|1.3e-07,EF-hand_1|PF00036.28|1.1e-06,EF-hand_1|PF00036.28|6.2e-07,EF-hand_5|PF13202.2|2.1e-06,EF-hand_5|PF13202.2|6.6e-07,EF-hand_5|PF13202.2|2.5e-07,EF-hand_5|PF13202.2|1.7e-05,EF-hand_6|PF13405.2|5.8e-08,EF-hand_6|PF13405.2|3.5e-05,EF-hand_6|PF13405.2|2.9e-07,EF-hand_6|PF13405.2|0.0071,EF-hand_8|PF13833.2|5e-05,EF-hand_8|PF13833.2|7.1e-06,EF-hand_8|PF13833.2|0.00039,EF-hand_8|PF13833.2|1.1e-08,EF-hand_7|PF13499.2|1.9e-13,EF-hand_7|PF13499.2|5.3e-10,SPARC_Ca_bdg|PF10591.5|2.2e-06,SPARC_Ca_bdg|PF10591.5|0.017,EF-hand_4|PF12763.3|6.2e-06,EF-hand_4|PF12763.3|0.43,EF-hand_9|PF14658.2|1.3,EF-hand_9|PF14658.2|0.0042 R_Transcript_88257:553-1104(+)
MASVRFLDFQYSLSKRKLNTKPSRLFSFSNKQYSNLLPIFQPNADEMRRVFDKFDSNKDGKISQDEYRSILRAMGKPDNMVRQIFKVADLNKDGYIDFKEFMTLHNDGGGVRTMDIRNAFRAFDLDEDGKISAEEVYQVLRRLGENCNLDECRRMVSAVDMNGDGYINMDEFMTMMTRSMVRY*

Click here to download the sequence:
Link to NCBI Protein BLAST