Transcript Information: R_Transcript_88317.p1


Annotated TAIR IDAT1G02460.1
Annotated Gene NamePectin lyase-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:504897-507099 | Reverse length=491
E-Value6.6E-232
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 116.547801120308
Replicate 29.4059859614414
Replicate 311.720857241343
Condition 2: 8 Hour
Replicate 14.3149188760538
Replicate 23.9404526386803
Replicate 310.135612724335
Condition 3: 24 Hour
Replicate 111.795731102132
Replicate 29.9740342753566
Replicate 317.937694286927


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_88317.p1 GENE.R_Transcript_88317~~R_Transcript_88317.p1 ORF type:complete len:471 (+),score=71.22,Glyco_hydro_28|PF00295.13|2.7e-90,Pectate_lyase_3|PF12708.3|5.6e-10,Pectate_lyase_3|PF12708.3|1.2e+02,Beta_helix|PF13229.2|2.4e-06 R_Transcript_88317:365-1777(+)
ATGGAAACTCTCCATCTGAAATTGTCATTTTTGCACCTCTTTTTGATCACCACTAGTTGGCTTTTCTTAGGCTCTCAGGCCAGATACCACAAACACTCTTCTTTCAAACATCACAAGCACGGGCATTCTCCGACTTCAGGGTTTTCCCTTCCCCCTTCTCCTATCCCTGACGACCCTGCTGATGCACCTACTGTTGTTCCTAGTGGTGTTTTTGACGTCAAGAGTTTTGGGGCGGTTGGAGATGGCATTGCTGATGATACCGAAGCCTTCAAGGCGGCTTGGGATGCAGCTTGCAGTTGTACTGATACGGAATCTGTGGTGTTACAAGCCCCTGCTGGATATACCTTCATGATTCAGTCTACTATCTTCACAGGGCCTTGCCAAAGTGACTTATTAATCTTTCAGATTGATGGGTCTGTTGTGCCACCTGATGGGCCAGATTCATGGCCGAAGAACACGAGTAAACGTCAGTGGCTGGTTTTCTACAGAGTTGAAGGAGTGTCACTCCAAGGAGGTGGACGTATTGATGGAAGAGGACAAAAGTGGTGGGATCTTCCCTGCAAACCCCACAAGGGCGTGAATGGAACAACAGCTCCTGGTCCTTGTGATAGTCCAATTGCCATTCGATTCTTTGAGAGCTCCAACTTGACAGTAAAAGGACTCAGAATACAGAACAGCCCTCAGTTCCACTTCAGGTTTGATAGTTGTCACAATGTCCATGTAGAATCGATTTTCATAACAGCTCCAGCGCTGAGTCCCAATACAGATGGAATCCACATTGAGAATACCAACAACGTTGAGATATATAATTCTGTCATCTCCAATGGGGATGACTGTATCTCAATTGGCTCTGGTTGCTATGATGTAGACATCAGAAACATGACTTGTGGACCTGGTCATGGCATCAGCATTGGGAGTCTTGGAAATCATAATTCGAGGGCGTGTGTTCACAATGTGACGGTGAGAGATTCTATAATCAAGCTATCAAGCAACGGGGTGAGGATCAAGACGTGGCAAGGGGGATCAGGGGCTGTATCAGGTGTGACATTTGACAACATCCGTATGGACAATGTGAGGAACCCCATCATAATCGACCAGTTCTATTGCCTCGGCAAGGGATGCAACAACCAAAGCTCAGCAGTTTTTGTAAGTGACATTCAGTATTCCAACCTCAAGGGCACCTATGATATCAGGAGCCCTCCCATGCACTTTGCTTGCAGTGATGCAGTTCCGTGTGCCAACATTACCCTTGCTGATATCGAGCTTCTCCCCTCCACCGGAGAAATGGTGTTGGACCCCTTCTGCTGGAATGTTTACGGAAACTTGCAGTCACTAACAATTCCACCTGTTTCCTGCTTGCTGGATGGCATCCCGCCACAGCCCATCTTAGACAGCAGTGTTGATCATTGCTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_88317.p1 GENE.R_Transcript_88317~~R_Transcript_88317.p1 ORF type:complete len:471 (+),score=71.22,Glyco_hydro_28|PF00295.13|2.7e-90,Pectate_lyase_3|PF12708.3|5.6e-10,Pectate_lyase_3|PF12708.3|1.2e+02,Beta_helix|PF13229.2|2.4e-06 R_Transcript_88317:365-1777(+)
METLHLKLSFLHLFLITTSWLFLGSQARYHKHSSFKHHKHGHSPTSGFSLPPSPIPDDPADAPTVVPSGVFDVKSFGAVGDGIADDTEAFKAAWDAACSCTDTESVVLQAPAGYTFMIQSTIFTGPCQSDLLIFQIDGSVVPPDGPDSWPKNTSKRQWLVFYRVEGVSLQGGGRIDGRGQKWWDLPCKPHKGVNGTTAPGPCDSPIAIRFFESSNLTVKGLRIQNSPQFHFRFDSCHNVHVESIFITAPALSPNTDGIHIENTNNVEIYNSVISNGDDCISIGSGCYDVDIRNMTCGPGHGISIGSLGNHNSRACVHNVTVRDSIIKLSSNGVRIKTWQGGSGAVSGVTFDNIRMDNVRNPIIIDQFYCLGKGCNNQSSAVFVSDIQYSNLKGTYDIRSPPMHFACSDAVPCANITLADIELLPSTGEMVLDPFCWNVYGNLQSLTIPPVSCLLDGIPPQPILDSSVDHC*

Click here to download the sequence:
Link to NCBI Protein BLAST