Transcript Information: R_Transcript_88319.p1


Annotated TAIR IDAT1G02460.1
Annotated Gene NamePectin lyase-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:504897-507099 | Reverse length=491
E-Value2.7E-133
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.81486432833566
Replicate 20.12497797866844
Replicate 30.13634962854853
Condition 2: 8 Hour
Replicate 10.21862379417183
Replicate 20
Replicate 30.32413590393548
Condition 3: 24 Hour
Replicate 10.34163403612655
Replicate 20.1312813029201
Replicate 30.19542593470444


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_88319.p1 GENE.R_Transcript_88319~~R_Transcript_88319.p1 ORF type:complete len:336 (+),score=45.86,Glyco_hydro_28|PF00295.13|3.6e-46,Pectate_lyase_3|PF12708.3|3e-10,Beta_helix|PF13229.2|9.1e-07 R_Transcript_88319:365-1372(+)
ATGGAAACTCTCCATCTGAAATTGTCATTTTTGCACCTCTTTTTGATCACCACTAGTTGGCTTTTCTTAGGCTCTCAGGCCAGATACCACAAACACTCTTCTTTCAAACATCACAAGCACGGGCATTCTCCGACTTCAGGGTTTTCCCTTCCCCCTTCTCCTATCCCTGACGACCCTGCTGATGCACCTACTGTTGTTCCTAGTGGTGTTTTTGACGTCAAGAGTTTTGGGGCGGTTGGAGATGGCATTGCTGATGATACCGAAGCCTTCAAGGCGGCTTGGGATGCAGCTTGCAGTTGTACTGATACGGAATCTGTGGTGTTACAAGCCCCTGCTGGATATACCTTCATGATTCAGTCTACTATCTTCACAGGGCCTTGCCAAAGTGACTTATTAATCTTTCAGATTGATGGGTCTGTTGTGCCACCTGATGGGCCAGATTCATGGCCGAAGAACACGAGTAAACGTCAGTGGCTGGTTTTCTACAGAGTTGAAGGAGTGTCACTCCAAGGAGGTGGACGTATTGATGGAAGAGGACAAAAGTGGTGGGATCTTCCCTGCAAACCCCACAAGGGCGTGAATGGAACAACAGCTCCTGGTCCTTGTGATAGTCCAATTGCCATTCGATTCTTTGAGAGCTCCAACTTGACAGTAAAAGGACTCAGAATACAGAACAGCCCTCAGTTCCACTTCAGGTTTGATAGTTGTCACAATGTCCATGTAGAATCGATTTTCATAACAGCTCCAGCGCTGAGTCCCAATACAGATGGAATCCACATTGAGAATACCAACAACGTTGAGATATATAATTCTGTCATCTCCAATGGGGATGACTGTATCTCAATTGGCTCTGGTTGCTATGATGTAGACATCAGAAACATGACTTGTGGACCTGGTCATGGCATCAGGTATGCCTTATGCTTGGCTTGCTCATGTTTGGTTTTGTCTTGTAAGTGGTACAGTCATTTTTACTTGATATTCACTCTTTTTTCTTTATATATTTATTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_88319.p1 GENE.R_Transcript_88319~~R_Transcript_88319.p1 ORF type:complete len:336 (+),score=45.86,Glyco_hydro_28|PF00295.13|3.6e-46,Pectate_lyase_3|PF12708.3|3e-10,Beta_helix|PF13229.2|9.1e-07 R_Transcript_88319:365-1372(+)
METLHLKLSFLHLFLITTSWLFLGSQARYHKHSSFKHHKHGHSPTSGFSLPPSPIPDDPADAPTVVPSGVFDVKSFGAVGDGIADDTEAFKAAWDAACSCTDTESVVLQAPAGYTFMIQSTIFTGPCQSDLLIFQIDGSVVPPDGPDSWPKNTSKRQWLVFYRVEGVSLQGGGRIDGRGQKWWDLPCKPHKGVNGTTAPGPCDSPIAIRFFESSNLTVKGLRIQNSPQFHFRFDSCHNVHVESIFITAPALSPNTDGIHIENTNNVEIYNSVISNGDDCISIGSGCYDVDIRNMTCGPGHGIRYALCLACSCLVLSCKWYSHFYLIFTLFSLYIY*

Click here to download the sequence:
Link to NCBI Protein BLAST