Transcript Information: R_Transcript_88338.p2


Annotated TAIR IDAT5G63520.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: F-box domain, Skp2-like (InterPro:IPR022364), FIST C domain (InterPro:IPR019494), FIST domain, N-terminal (InterPro:IPR013702); Has 137 Blast hits to 137 proteins in 56 species: Archae - 0; Bacteria - 88; Metazoa - 6; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:25426300-25429093 | Reverse length=519
E-Value2E-26
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.11776103841754
Replicate 20
Replicate 30
Condition 2: 8 Hour
Replicate 10
Replicate 20
Replicate 30.46842866117128
Condition 3: 24 Hour
Replicate 10
Replicate 20.28458398568487
Replicate 30.14121099797998


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_88338.p2 GENE.R_Transcript_88338~~R_Transcript_88338.p2 ORF type:complete len:155 (+),score=19.68,F-box|PF00646.29|5.4e-06,F-box|PF00646.29|7.1e+03 R_Transcript_88338:81-545(+)
ATGGACAACCCACCGAAACAAGCATCACCCTCCACCATCGACAGAATAACCCAACTCGGAGATGATCTTCTCCGCAACATTCTCTCAAAATTACCAGCCCAATCATTCGCAATTGCAGCTTGTGTCAACCGCACTTGGAATGGCGTTTGTTCTCACATTCTCTCTCGTCCTCTCCTCTCCTCTGCCATCTCTCTCAACCCCTCTCTTCCCGAAGCTGTGAAAGAGGTTTTCGGCAAGGTTCTTTCTGGCCCAATTCAACCCCATTTCGTCATTTGTACTTGTCAAGATTTTGCCTTGATCGAAGCTCATCGACTTATAACTGAGAAATTGGGCACTTCAATCCCTGTTATTACTTGTGATGCTGCTGGGATTATTGGCAGAGATGCATTAACGGATCATTTCAGCGAGGTTTTTCTGTGCAGTGTACTACGGTTGGCATTTATTCTTTTATATGATGGGGCTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_88338.p2 GENE.R_Transcript_88338~~R_Transcript_88338.p2 ORF type:complete len:155 (+),score=19.68,F-box|PF00646.29|5.4e-06,F-box|PF00646.29|7.1e+03 R_Transcript_88338:81-545(+)
MDNPPKQASPSTIDRITQLGDDLLRNILSKLPAQSFAIAACVNRTWNGVCSHILSRPLLSSAISLNPSLPEAVKEVFGKVLSGPIQPHFVICTCQDFALIEAHRLITEKLGTSIPVITCDAAGIIGRDALTDHFSEVFLCSVLRLAFILLYDGA*

Click here to download the sequence:
Link to NCBI Protein BLAST