Transcript Information: R_Transcript_88340.p1


Annotated TAIR IDAT5G63520.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: F-box domain, Skp2-like (InterPro:IPR022364), FIST C domain (InterPro:IPR019494), FIST domain, N-terminal (InterPro:IPR013702); Has 137 Blast hits to 137 proteins in 56 species: Archae - 0; Bacteria - 88; Metazoa - 6; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:25426300-25429093 | Reverse length=519
E-Value1.5E-109
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 112.631048980665
Replicate 28.4825053681844
Replicate 39.3001354640379
Condition 2: 8 Hour
Replicate 110.969667496366
Replicate 211.404049739005
Replicate 312.815037097993
Condition 3: 24 Hour
Replicate 110.239182023556
Replicate 27.6752300939209
Replicate 310.900076934075


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_88340.p1 GENE.R_Transcript_88340~~R_Transcript_88340.p1 ORF type:complete len:500 (+),score=104.97,FIST_C|PF10442.5|1.1e-08 R_Transcript_88340:81-1580(+)
ATGGACAACCCACCGAAACAAGCATCACCCTCCACCATCGACAGAATAACCCAACTCGGAGATGATCTTCTCCGCAACATTCTCTCAAAATTACCAGCCCAATCATTCGCAATTGCAGCTTGTGTCAACCGCACTTGGAATGGCGTTTGTTCTCACATTCTCTCTCGTCCTCTCCTCTCCTCTGCCATCTCTCTCAACCCCTCTCTTCCCGAAGCTGTGAAAGAGGTTTTCGGCAAGGTTCTTTCTGGCCCAATTCAACCCCATTTCGTCATTTGTACTTGTCAAGATTTTGCCTTGATCGAAGCTCATCGACTTATAACTGAGAAATTGGGCACTTCAATCCCTGTTATTACTTGTGATGCTGCTGGGATTATTGGCAGAGATGCATTAACGGATCATTTCAGCGAGGTGAAGTTCCCATATGAAGAGGATCATGGTGGACCTGCTGAGTTTGCAGGAATTTCACTGACTGTTGGATGTGTACCTGGATTAAAAGTGGATGCTATCCCACTATTAGTCGATGATGAGGGAGCTTGCATTGATGAATTTGTGATGGAGATAAGGAATTTCTCAGCTTTTGTGTCAGGTTGCACATCCCCTGAAGCAATTATCATGTTTGGAGATACGGAAGCTGATATGATGCCTGTTCTTGAAAAATTAGATTACACATTCCGTAAACAGACCATTATTGCTGGAAATGATGGCTGCCATTTCAAGTGTAGCAGTCACTTGAATTGTGTCTGCATGAATGAGATAGGAACACCTCCACCTTCTTCTGATGCTGTTGCTCTGGTATTTTCCAGGGACAGAAGTAAATTGAGTGCAGGTATTGGGAAAATTGAATTCCATTTTTCCCTAGGAGCTGGGCTTTCTGCTTTGGGTCCAACATATAAAGTAGTTTCTGCCAAAATGAGAACAAGTGCATCTTCAACGTGGCTGACTGCCAAACGACAGGGAGAAAATGAGGCTCTTGATGGTCAACAAATGCTGAGTGATATTGACATGGAGGATATGGAGAGTGATTTGTACATTGGGGTTACAAAGAGAAGAAAATATTCAATCGGTTCAGAAAGGAAGATTAAATTAGTGAGATGCATGGCTTCTCATCCTGTTCATGATGCAGATGAGGAGTATTTATATGTTCGTGGTGGGGATATCAAGACTGGAGATCCTTTTCGGTTTTATGTTCCTGATCCAGAACTCGCTTTATCCTTGTGTCCCTCAGTTTCCGAAAACATTAGACACCTGAAGCATAAGGAAATCATTGGAGGGTTCATCTTCGCTTGTTGTGGTCGGGGTTTGCCCTTTTTCGACAAACCAAATGTGGATAGCTCCCCCATCTTGGACAATTTTCCTTATGCTCCACTGACAGGAATGTTCTGTGGCGGGGAAATTGGTCGTGGGCCCCATTCAGATGAGTATCGAGAACAGGACTGTCCAAACAGCTACTTGCATGCTTATAGTTCTGTTTACTTGCTCATTTCATACACTCCGCCATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_88340.p1 GENE.R_Transcript_88340~~R_Transcript_88340.p1 ORF type:complete len:500 (+),score=104.97,FIST_C|PF10442.5|1.1e-08 R_Transcript_88340:81-1580(+)
MDNPPKQASPSTIDRITQLGDDLLRNILSKLPAQSFAIAACVNRTWNGVCSHILSRPLLSSAISLNPSLPEAVKEVFGKVLSGPIQPHFVICTCQDFALIEAHRLITEKLGTSIPVITCDAAGIIGRDALTDHFSEVKFPYEEDHGGPAEFAGISLTVGCVPGLKVDAIPLLVDDEGACIDEFVMEIRNFSAFVSGCTSPEAIIMFGDTEADMMPVLEKLDYTFRKQTIIAGNDGCHFKCSSHLNCVCMNEIGTPPPSSDAVALVFSRDRSKLSAGIGKIEFHFSLGAGLSALGPTYKVVSAKMRTSASSTWLTAKRQGENEALDGQQMLSDIDMEDMESDLYIGVTKRRKYSIGSERKIKLVRCMASHPVHDADEEYLYVRGGDIKTGDPFRFYVPDPELALSLCPSVSENIRHLKHKEIIGGFIFACCGRGLPFFDKPNVDSSPILDNFPYAPLTGMFCGGEIGRGPHSDEYREQDCPNSYLHAYSSVYLLISYTPP*

Click here to download the sequence:
Link to NCBI Protein BLAST