Transcript Information: R_Transcript_88343.p2


Annotated TAIR IDAT5G63520.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: F-box domain, Skp2-like (InterPro:IPR022364), FIST C domain (InterPro:IPR019494), FIST domain, N-terminal (InterPro:IPR013702); Has 137 Blast hits to 137 proteins in 56 species: Archae - 0; Bacteria - 88; Metazoa - 6; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:25426300-25429093 | Reverse length=519
E-Value1E-39
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.9922886811014
Replicate 21.0326049385065
Replicate 32.8164021634614
Condition 2: 8 Hour
Replicate 13.0105571656449
Replicate 22.9325746676965
Replicate 33.273241259414
Condition 3: 24 Hour
Replicate 12.5404130948689
Replicate 21.8981985110743
Replicate 33.4984446015942


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_88343.p2 GENE.R_Transcript_88343~~R_Transcript_88343.p2 ORF type:complete len:244 (+),score=46.85 R_Transcript_88343:81-812(+)
ATGGACAACCCACCGAAACAAGCATCACCCTCCACCATCGACAGAATAACCCAACTCGGAGATGATCTTCTCCACAACATTCTCTCAAAATTACCTGCGCAATCATTCGCAATTGCAGCTTGTGTCAACCGCACTTGGAATGGCGTTTGTTCTCACATTCTCTCTCGTCCTCTCCTCTCCTCTGCCATCTCTCTCAACCCCTCCCTCCCCGAAGCAGTGAAAGAGGTTCTCGGCAAGGTTCTTTCTGGCCCAATTCAACCCCATTTCGTCATTTGTGCTTGCCAAGATTTTGCCTTGATCGAAGCTCATCGACTTATAACTGAGAAATTGGGCACTTCAATCCCTGTTATTACTTGTGATGCTGCTGGGATTATTGGCAGAGATGCATTAACGGATCATTTCAGCGAGGTGAAGTTCCCATATGAAGAGGATCATGGTGGACCTGCTGAGTTTGCAGGAATTTCACTGACTGTTGGATGTGTACCTGGATTAAAAGTGGATGCTATTCCACTATTAGTCGAAGATGAGGGAGCTTGCATTGATGAATTTGTGATGGAGATAAGGAATTTCTCAGCTTTTGTGTCAGGTTGCACATCCCCTGAAGCAATTATCATGTTTGGAGATGCGGAAGCCGATATGATGCCTGTCCTTGGAAAATTAGGGGAAGAACTGCGTGCATCCAACTCCTCCCTACCCCGCTTGAGCGGAAGTCCTATTAGGGCATTGGGATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_88343.p2 GENE.R_Transcript_88343~~R_Transcript_88343.p2 ORF type:complete len:244 (+),score=46.85 R_Transcript_88343:81-812(+)
MDNPPKQASPSTIDRITQLGDDLLHNILSKLPAQSFAIAACVNRTWNGVCSHILSRPLLSSAISLNPSLPEAVKEVLGKVLSGPIQPHFVICACQDFALIEAHRLITEKLGTSIPVITCDAAGIIGRDALTDHFSEVKFPYEEDHGGPAEFAGISLTVGCVPGLKVDAIPLLVEDEGACIDEFVMEIRNFSAFVSGCTSPEAIIMFGDAEADMMPVLGKLGEELRASNSSLPRLSGSPIRALG*

Click here to download the sequence:
Link to NCBI Protein BLAST