Transcript Information: R_Transcript_88476.p1


Annotated TAIR IDAT1G29040.1
Annotated Gene Nameunknown protein; LOCATED IN: chloroplast, vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP02058 (InterPro:IPR011719); Has 344 Blast hits to 344 proteins in 122 species: Archae - 2; Bacteria - 227; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 83 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:10134120-10135180 | Forward length=198
E-Value5.8E-73
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 122.742994130746
Replicate 218.301588063404
Replicate 325.601647901582
Condition 2: 8 Hour
Replicate 122.259877224768
Replicate 224.752420006018
Replicate 327.567151958235
Condition 3: 24 Hour
Replicate 126.027032792905
Replicate 226.301191083416
Replicate 327.03775284852


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_88476.p1 GENE.R_Transcript_88476~~R_Transcript_88476.p1 ORF type:complete len:187 (+),score=49.90,Lin0512_fam|PF09585.6|6.1e-40 R_Transcript_88476:158-718(+)
ATGACATCTAGTACTTGTTCAATTGGCCTCATCATAAACCCATCTCACAGTTCAGCTCCTTTTCTTCCTTCTCTAAACAATTTCTCTAAAACCCATCATTACAACAACAAGAACACTTTCCCTCGATTTTCACGCCCCACCATCAGAATCAGAGCTGTAATGGCTGCTGATCAGACCAGCACAAGTGGGGAAATGATGAAGCTTCTCTTTGTTGAGATGGGTGTCGGTTATGACCAACATGGGCAGGATGTAACAGCTGCTGCAATGAGGGCTTGTAGGGATGCTATTTCTTCTAATTCCATCCCTGCTTTCCGTAGAGGATCAATACCTGGTGTTTCATTTGAGCAGATGAAACTGCAGATCAAGCTTGGAGTTCCCCGATCTCTCCAACAGTCTTTGGACATTGAGAAGGTCAAATCTGTGTTCCCATATGGGAAAATCCTTGATGTTGAGGTGGCTGATGGTGGGCTCATATGCTCAAGTGGCGTTCATGTAGAAGACATGGGAGACAAAAATGATGACTGCTACATCGTAAATGCAGCTGTATATGTTGGATATTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_88476.p1 GENE.R_Transcript_88476~~R_Transcript_88476.p1 ORF type:complete len:187 (+),score=49.90,Lin0512_fam|PF09585.6|6.1e-40 R_Transcript_88476:158-718(+)
MTSSTCSIGLIINPSHSSAPFLPSLNNFSKTHHYNNKNTFPRFSRPTIRIRAVMAADQTSTSGEMMKLLFVEMGVGYDQHGQDVTAAAMRACRDAISSNSIPAFRRGSIPGVSFEQMKLQIKLGVPRSLQQSLDIEKVKSVFPYGKILDVEVADGGLICSSGVHVEDMGDKNDDCYIVNAAVYVGY*

Click here to download the sequence:
Link to NCBI Protein BLAST