Transcript Information: R_Transcript_88885.p1


Annotated TAIR IDAT4G33780.1
Annotated Gene NameFUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: short hypocotyl in white light1 (TAIR:AT1G69935.1); Has 40 Blast hits to 40 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr4:16202174-16203617 | Reverse length=203
E-Value0.0008
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.738558267834
Replicate 22.0237397991613
Replicate 32.0698859273632
Condition 2: 8 Hour
Replicate 12.065072947358
Replicate 23.0981944719715
Replicate 35.5766996484321
Condition 3: 24 Hour
Replicate 12.7660008708077
Replicate 21.727219069744
Replicate 32.2415119257666


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_88885.p1 GENE.R_Transcript_88885~~R_Transcript_88885.p1 ORF type:internal len:166 (+),score=26.49 R_Transcript_88885:2-496(+)
AATAAAAATTCTCTAGTTCTTCCAGCCCAGCAAGCAGGTCACTGGGAAATTCACCGGGAGAAGTGGTTAGTGGTGGTGGTGGAACCACACTTTCCCAATAATCAATCCATACTCCTAACCAAGCTCACAAGCTTCAATCAAAAATTCTCTTCAATATTAATGGCGATTTCCTCAACCTCTCTCTCTTCGTCTTCTTTATCAAGACTACCTCACCATCATCAACTTCATTTTCCTATTCTCTCTCCTCCTCCTCGCCTTCACTTTCACTTTCAACTTCACCTCCTCCGTACCTTCCCCTCTCTTCATGCTTCTCGTCGTCAGGAAGGTGATGAGCTGTTCAATGAGAGCCAAAAATGGAATCGATTCGATTTCGACAATTACAGAGATTACGACGACGACGACGAAGATGATGAAGAAGAAGAGGAAGAAGAAGATCGGAGTTTAGATTTGCTAGTTAGGTTTGTCGAAAATATCTTCCGAAAAATATCTAAACGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_88885.p1 GENE.R_Transcript_88885~~R_Transcript_88885.p1 ORF type:internal len:166 (+),score=26.49 R_Transcript_88885:2-496(+)
NKNSLVLPAQQAGHWEIHREKWLVVVVEPHFPNNQSILLTKLTSFNQKFSSILMAISSTSLSSSSLSRLPHHHQLHFPILSPPPRLHFHFQLHLLRTFPSLHASRRQEGDELFNESQKWNRFDFDNYRDYDDDDEDDEEEEEEEDRSLDLLVRFVENIFRKISKR

Click here to download the sequence:
Link to NCBI Protein BLAST