Transcript Information: R_Transcript_88887.p1


Annotated TAIR IDAT4G33780.1
Annotated Gene NameFUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: short hypocotyl in white light1 (TAIR:AT1G69935.1); Has 40 Blast hits to 40 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr4:16202174-16203617 | Reverse length=203
E-Value9E-08
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.98664653809291
Replicate 20.56746757881887
Replicate 32.2700370590782
Condition 2: 8 Hour
Replicate 10.66178013370933
Replicate 21.8130444736096
Replicate 31.798808259678
Condition 3: 24 Hour
Replicate 10.82730836856591
Replicate 20.39739205208247
Replicate 30.98593264355393


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_88887.p1 GENE.R_Transcript_88887~~R_Transcript_88887.p1 ORF type:internal len:111 (+),score=13.37 R_Transcript_88887:3-332(+)
CGATTTCCTCAACTTCTCTCTTCTTCTTTATCTAGACTACCTCACCATCATGAACTACCCTTTCCTATTCTCTCTCCTCCTCCTCGCCTTCACTTTCACTTTCAACTTCAACTCCTTCGTACCTTCCCCTATCTTCATGCTTCACGTCGTGAGGAAGGTGACGAGCTGTTCAATGAGAGCCGAAAATGGAATCGATTCGATTTCGACAATTACGGAGATTACGACGACGATGACGATGAAGATGATGAAGAAGAAGAGGAAGAAGAAGATCGGAGTTTAGATTTGCTAGTTAGGTTTGTCGAAAATATCTTCCGAAAAATATCTAAACGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_88887.p1 GENE.R_Transcript_88887~~R_Transcript_88887.p1 ORF type:internal len:111 (+),score=13.37 R_Transcript_88887:3-332(+)
RFPQLLSSSLSRLPHHHELPFPILSPPPRLHFHFQLQLLRTFPYLHASRREEGDELFNESRKWNRFDFDNYGDYDDDDDEDDEEEEEEEDRSLDLLVRFVENIFRKISKR

Click here to download the sequence:
Link to NCBI Protein BLAST