Transcript Information: R_Transcript_88896.p1


Annotated TAIR IDAT4G20090.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)EMB1025
Annotation TypeOrtholog
Chromosome Positionchr4:10868400-10870382 | Reverse length=660
E-Value1.4E-255
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.3000500072182
Replicate 21.1871898458327
Replicate 31.6652717153907
Condition 2: 8 Hour
Replicate 11.2658282363681
Replicate 21.5894649450923
Replicate 32.521871588616
Condition 3: 24 Hour
Replicate 11.8173385366034
Replicate 21.3539577348012
Replicate 32.1569466654293


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_88896.p1 GENE.R_Transcript_88896~~R_Transcript_88896.p1 ORF type:complete len:619 (+),score=92.78,PPR_2|PF13041.2|85,PPR_2|PF13041.2|0.042,PPR_2|PF13041.2|7.3,PPR_2|PF13041.2|3.9e-17,PPR_2|PF13041.2|5.9e-17,PPR_2|PF13041.2|2.8e-18,PPR_2|PF13041.2|6.9e-17,PPR_2|PF13041.2|5.8e-09,PPR_2|PF13041.2|2.4e-13,PPR_2|PF13041.2|2.3e-11,PPR_2|PF13041.2|5.9e-12,PPR_2|PF13041.2|4.4e-16,PPR_2|PF13041.2|1.7e-15,PPR_2|PF13041.2|1.9e-13,PPR_2|PF13041.2|15,PPR_1|PF12854.3|1.8e+02,PPR_1|PF12854.3|1.6e+02,PPR_1|PF12854.3|6.9e-09,PPR_1|PF12854.3|4.3e-10,PPR_1|PF12854.3|9.7e-12,PPR_1|PF12854.3|5.6e-16,PPR_1|PF12854.3|5.6e-05,PPR_1|PF12854.3|0.00015,PPR_1|PF12854.3|6.3e-09,PPR_1|PF12854.3|8.9e-08,PPR_1|PF12854.3|3.1e-10,PPR_1|PF12854.3|1.9e-10,PPR_1|PF12854.3|1.4e-07,PPR_1|PF12854.3|95,PPR|PF01535.16|2.9,PPR|PF01535.16|0.055,PPR|PF01535.16|17,PPR|PF01535.16|9e-07,PPR|PF01535.16|2.4e-05,PPR|PF01535.16|3.3e-06,PPR|PF01535.16|1.6e-08,PPR|PF01535.16|0.058,PPR|PF01535.16|2.6e-06,PPR|PF01535.16|2e-05,PPR|PF01535.16|7.3e-07,PPR|PF01535.16|5.8e-07,PPR|PF01535.16|1.1e-06,PPR|PF01535.16|1.4e-05,PPR|PF01535.16|5.2e+03,PPR|PF01535.16|2.7e+02,PPR_3|PF13812.2|0.071,PPR_3|PF13812.2|0.36,PPR_3|PF13812.2|3.9e+02,PPR_3|PF13812.2|5.8e-05,PPR_3|PF13812.2|1.8,PPR_3|PF13812.2|0.086,PPR_3|PF13812.2|0.0024,PPR_3|PF13812.2|0.082,PPR_3|PF13812.2|0.00067,PPR_3|PF13812.2|0.016,PPR_3|PF13812.2|2.2e-05,PPR_3|PF13812.2|0.15,PPR_3|PF13812.2|0.21,PPR_3|PF13812.2|0.016,PPR_3|PF13812.2|5.7e+03,PPR_3|PF13812.2|4.7e+03,MRP-S27|PF10037.5|0.0042,MRP-S27|PF10037.5|1.2e+02,MRP-S27|PF10037.5|20,MRP-S27|PF10037.5|32,MRP-S27|PF10037.5|1.1e+03 R_Transcript_88896:300-2156(+)
ATGGCCGTGAGACGTCTGTCTGTCTATCTATCTTGCCGGGGTTTCAGTAAATTTCCATGCAACATAGCTCAGTTCAATTCTGCCCCCAACTTGGGGTCTTACAAATTGGGTGACTCCACCTTTTATTCCCTCATCGAACACTGTGCTCTGTCGGGCAATTTCACCTCATTGGATAGCCTCTTTGATCGAATGAAACAAGAACGACGCATATTTAGAGAAAAGGATTTCATTCTAGTGTTTAAGGCTTATGGGAAGGCACATTTGCCTGAAAAAGCTCTTGTTTTGTTTGAAAGAATGATGGGTGATGAGTTCCAATGTAGACCAACTATTCAATCATTTAATTGCGTCCTAAATGTACTTATTGAGTCGGGCAAATTGAATCGTGGGTTGGAATTTTATGACAGTGTTGTTGGAAGTAAGGATGTGATGCCAAATGTTTTGACTTTCAATTTGGTTATCAAAGCTTTGTCTAAGTTGGGGAAGGTTGATAGGGCCGTGGAATTGTTTAGGGAGATGCCTAGGTGGAAATGTGCACCGGATGTTTTCACTTATTGCACGTTGATGACCGGGTTATGTAATGGTGATAGGATAGATGAAGCGGTTTGTTTGTTGGATGAAATGCAGATAGAGGGGTGCTTTCCTAGCTCGGTCACTTTTAATGTTCTAATTAATGGGCTTTGTAAGAAGGGTGATATTGGTCGAGCTGCTAAACTTGTGGAGAACATGCTTTTCAAAGGTTGTGTTCCGAACGAAGTCACATATAACACCCTTATTCATGGGCTCTGCAATGTAGGGAAACTGGATAAGGCCGTTAGTCTCTTGAACCACATGGTATCGAACAAATGTGTGCCTAATGAGGTCACCTTTGGAACTATCGTTAATGGTTTCGTTAAGCAAGGGAGAGCAGCTGATGGAACTCGTCTGTTGGCTTGTATGGAAGAGAGGGGACTCCAAGTAAATGAATATGTTTATTCATCTCTTCTCAGTGGGTTGTTTAAGGAGGGAAGCCCTGAAGAGGCATTGAGACTTTGGAAGGACATGATAAAAAAAGAGCTTCAACCTAACGTTATCCTTTATAGTGTTTTTGTTGATGGTCTATGCCGAGTTGGACGACCTGAAGATGCCGAAAAGGTTTTATCTGAAATGTTTGATAGGGGCCTACTTCCTAATGCTTTTACTTATAGCTCCTTGATAAAGGGTTATTTTAGGATGGGTAACAGCCACAAGGCACTTCTTGTGTGGAAACAAATGGAAAGCAAGAACTGTAGTTATAATGTGGTTTGTTATAGTGTACTTATTAGTGGTTTATGTGAGGAAGGGAAGCTTAAAGAGGCTATGTCGGTGTGGAGGCATATGTTGGGCAGAGGATATACACCTGATACCATTGCTTATAGTTCTCTTATTCATGGTTTCTGCAAGGCTGGATTGGTTGAGCAGGGATTAAATGTTTTTAATGAGATGCTTTTTCAGGGGGGTGAATCCCAACCAGATGTCATCACTTATAATATACTTTTTGATGGTTTGTGCAACATAAATGACATTTCTAGGGCTGTTGATCTTTTGAAAAGTATGTTGGATCGTGGTTGTGATCCAGATCTATATACCTGTGATATTTTTCTAAGGGCTTTAAGAGAGAAGCTAGATCCTCCGCAAGCTGGGGATGAATTCCTGGATGAACTTGTTGTACGATTGTGCAAGCTGGAGAGACGGTTAGCAGCTCTCAGAATTCTACAATTGATGCTGCAGAAGCTTTTTCCACCAAAAGCCTCTACATGGGAAAGAGTTCTTCAAATATGTTGCAAACATAGGAAGATTGTCGCAGCTATAGAAGAGTGCAGGAGTAATTTATTCTTATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_88896.p1 GENE.R_Transcript_88896~~R_Transcript_88896.p1 ORF type:complete len:619 (+),score=92.78,PPR_2|PF13041.2|85,PPR_2|PF13041.2|0.042,PPR_2|PF13041.2|7.3,PPR_2|PF13041.2|3.9e-17,PPR_2|PF13041.2|5.9e-17,PPR_2|PF13041.2|2.8e-18,PPR_2|PF13041.2|6.9e-17,PPR_2|PF13041.2|5.8e-09,PPR_2|PF13041.2|2.4e-13,PPR_2|PF13041.2|2.3e-11,PPR_2|PF13041.2|5.9e-12,PPR_2|PF13041.2|4.4e-16,PPR_2|PF13041.2|1.7e-15,PPR_2|PF13041.2|1.9e-13,PPR_2|PF13041.2|15,PPR_1|PF12854.3|1.8e+02,PPR_1|PF12854.3|1.6e+02,PPR_1|PF12854.3|6.9e-09,PPR_1|PF12854.3|4.3e-10,PPR_1|PF12854.3|9.7e-12,PPR_1|PF12854.3|5.6e-16,PPR_1|PF12854.3|5.6e-05,PPR_1|PF12854.3|0.00015,PPR_1|PF12854.3|6.3e-09,PPR_1|PF12854.3|8.9e-08,PPR_1|PF12854.3|3.1e-10,PPR_1|PF12854.3|1.9e-10,PPR_1|PF12854.3|1.4e-07,PPR_1|PF12854.3|95,PPR|PF01535.16|2.9,PPR|PF01535.16|0.055,PPR|PF01535.16|17,PPR|PF01535.16|9e-07,PPR|PF01535.16|2.4e-05,PPR|PF01535.16|3.3e-06,PPR|PF01535.16|1.6e-08,PPR|PF01535.16|0.058,PPR|PF01535.16|2.6e-06,PPR|PF01535.16|2e-05,PPR|PF01535.16|7.3e-07,PPR|PF01535.16|5.8e-07,PPR|PF01535.16|1.1e-06,PPR|PF01535.16|1.4e-05,PPR|PF01535.16|5.2e+03,PPR|PF01535.16|2.7e+02,PPR_3|PF13812.2|0.071,PPR_3|PF13812.2|0.36,PPR_3|PF13812.2|3.9e+02,PPR_3|PF13812.2|5.8e-05,PPR_3|PF13812.2|1.8,PPR_3|PF13812.2|0.086,PPR_3|PF13812.2|0.0024,PPR_3|PF13812.2|0.082,PPR_3|PF13812.2|0.00067,PPR_3|PF13812.2|0.016,PPR_3|PF13812.2|2.2e-05,PPR_3|PF13812.2|0.15,PPR_3|PF13812.2|0.21,PPR_3|PF13812.2|0.016,PPR_3|PF13812.2|5.7e+03,PPR_3|PF13812.2|4.7e+03,MRP-S27|PF10037.5|0.0042,MRP-S27|PF10037.5|1.2e+02,MRP-S27|PF10037.5|20,MRP-S27|PF10037.5|32,MRP-S27|PF10037.5|1.1e+03 R_Transcript_88896:300-2156(+)
MAVRRLSVYLSCRGFSKFPCNIAQFNSAPNLGSYKLGDSTFYSLIEHCALSGNFTSLDSLFDRMKQERRIFREKDFILVFKAYGKAHLPEKALVLFERMMGDEFQCRPTIQSFNCVLNVLIESGKLNRGLEFYDSVVGSKDVMPNVLTFNLVIKALSKLGKVDRAVELFREMPRWKCAPDVFTYCTLMTGLCNGDRIDEAVCLLDEMQIEGCFPSSVTFNVLINGLCKKGDIGRAAKLVENMLFKGCVPNEVTYNTLIHGLCNVGKLDKAVSLLNHMVSNKCVPNEVTFGTIVNGFVKQGRAADGTRLLACMEERGLQVNEYVYSSLLSGLFKEGSPEEALRLWKDMIKKELQPNVILYSVFVDGLCRVGRPEDAEKVLSEMFDRGLLPNAFTYSSLIKGYFRMGNSHKALLVWKQMESKNCSYNVVCYSVLISGLCEEGKLKEAMSVWRHMLGRGYTPDTIAYSSLIHGFCKAGLVEQGLNVFNEMLFQGGESQPDVITYNILFDGLCNINDISRAVDLLKSMLDRGCDPDLYTCDIFLRALREKLDPPQAGDEFLDELVVRLCKLERRLAALRILQLMLQKLFPPKASTWERVLQICCKHRKIVAAIEECRSNLFL*

Click here to download the sequence:
Link to NCBI Protein BLAST