Transcript Information: R_Transcript_88924.p1


Annotated TAIR IDAT5G24830.1
Annotated Gene NameTetratricopeptide repeat (TPR)-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:8531226-8533266 | Forward length=593
E-Value6.2E-135
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.281782363434
Replicate 21.2583399222096
Replicate 32.4318796763039
Condition 2: 8 Hour
Replicate 11.6351861865455
Replicate 21.9527482429803
Replicate 33.5122123289447
Condition 3: 24 Hour
Replicate 12.9090372172091
Replicate 22.1526536930872
Replicate 33.2231893888239


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_88924.p1 GENE.R_Transcript_88924~~R_Transcript_88924.p1 ORF type:complete len:584 (+),score=93.55,PPR_1|PF12854.3|0.033,PPR_1|PF12854.3|6.1e-07,PPR_1|PF12854.3|3.1e-10,PPR_1|PF12854.3|5.2e-08,PPR_1|PF12854.3|0.76,PPR_1|PF12854.3|7.7e-06,PPR_1|PF12854.3|3.1e-06,PPR_1|PF12854.3|4.4,PPR_1|PF12854.3|7.5e+02,PPR_1|PF12854.3|0.0028,PPR_1|PF12854.3|4.7e-05,PPR_1|PF12854.3|9.3e-10,PPR_1|PF12854.3|2.3e-09,PPR_1|PF12854.3|2.9e+03,PPR_2|PF13041.2|1.9e-05,PPR_2|PF13041.2|9.2e-06,PPR_2|PF13041.2|1.8e-14,PPR_2|PF13041.2|0.0061,PPR_2|PF13041.2|0.003,PPR_2|PF13041.2|7.3e-11,PPR_2|PF13041.2|4.8e-11,PPR_2|PF13041.2|2.7e+02,PPR_2|PF13041.2|3.7e-08,PPR_2|PF13041.2|3.9e-06,PPR_2|PF13041.2|3e-17,PPR_2|PF13041.2|7.3e-05,PPR|PF01535.16|0.012,PPR|PF01535.16|9.4e-05,PPR|PF01535.16|9.9e-07,PPR|PF01535.16|0.0002,PPR|PF01535.16|0.0049,PPR|PF01535.16|1.9e-07,PPR|PF01535.16|0.014,PPR|PF01535.16|3.9e+03,PPR|PF01535.16|0.00019,PPR|PF01535.16|0.00055,PPR|PF01535.16|7.5e-06,PPR|PF01535.16|5.3e-05,PPR_3|PF13812.2|12,PPR_3|PF13812.2|0.0022,PPR_3|PF13812.2|0.0021,PPR_3|PF13812.2|75,PPR_3|PF13812.2|0.016,PPR_3|PF13812.2|7.3,PPR_3|PF13812.2|0.18,PPR_3|PF13812.2|5.8e+02,PPR_3|PF13812.2|3.1,PPR_3|PF13812.2|0.22,PPR_3|PF13812.2|1.1,PPR_3|PF13812.2|1.6 R_Transcript_88924:166-1917(+)
ATGGCCTGTACATCTAATCTCTCACTCTTTGAAATTGCTGGTGCTAGACTTAGCTCTCTCTTCTCTTTCCGCCATTGGATTTTTGGATATGATGCAATGCTCATGTTTGTTAGAGATGTGGCAATGAGTGTACGTGATAGTTGTCAACCAATGATTAGAGGTTCTCATTCAGAAAACAATGATTTCAACGGAAAAGAAGAACATGATGCAGTTTTTAATCTGTTGGATTCCATCCTAAAGGAGAGTTTGGATCGTTTGAAGACTATGAGGGAAACTGCATCAGTGCCTGCAATTGTCTTGAAGAAGTTCTCTGGAGCTGAATTACTTGAATGTGAAGCCATGATCAGGGCTTTTTGTTTGGAAGGCAAGTTAGATGCTGCTCTTTGGCTTCGAAGCAAAATGATGGTGAAAAATTATATCCCTACTGTGTTTACACACAATCACCTAGTGCATGCATTTTGTAAAGTTGGTAATTTGGAGAAGGCCGATTATCTTATTAGGGAGATGTTAAATCAAGGTCCCTTCCCTAGCTGTGTAACTTTCAACACATATATCAAAGGCTATTGTTTAAAGGGTGATGTAGATAAAGCTTTGTCCTTGTTTTCATCCATGCCTATACATCGTATCAAGCCAAACAGAATTACTTGTAAAATTCTTCTTCATGCACTATGTAAGGAAGGATTAGTGGAAGATGCCAAAAAGCTTTTTGTGGAGATAGTTGGTGAAAAATGTGAGAAAACATCAGATACTATAACTTCAACGATACTAATGGATTGCTATTTCAAGAATGGTGATGTTGCTAAGGCTCTTCATTATTGGACAAATATGTTGCAGGATGGTACACAAGTGGATGTTGTTGCTTATAATGTTCTTATACATGGTTTCTGTAAAAACAAGTGTATAAAACTTGCATTATGTTGCTTTGGGGAAATGGTTAAGAGAGGAATACTACCCGACTTGGTCACTTGTAATACAATTATCAGTTACTTCTGTAGGATTGGGAAATTTCATGAGGTGTGGAACATCCTTGGTGTCATGTCGAGCTTTGAAGTGTCTCCTGATCACTTCACCTATAAACTGATTGTTCTAAGCCTTTGTTTACGTGGCTTCTATAAAAGAAGAAGGCTTTGTTTACGTGACCTCTCTAAAAAAAAAAGGCGTCATTTACATGAAAGACTTGCTGTGGCAAGAGAAGTACTGAACAATATGTTAGAGAATTCAGTTGTTCCAGAGCCTAGAATTTGGAATGTTATCATTCATGGTTATTGGAGATGTGGTGACTTGGGCAGTGCATTTTCTGTTAGGGACCAGATGATTGCTTGTGGTTTGTCACCGGATGTGGTTACCTACAACACAATCATGTATGTCTTGTTGCAGGAAGGTAATTTCAACGGAGCTCTCTCTCTGAAAAAAGAGATGGAGCGAATTCATCAGCTCCCAGACATAGTGACGTACAATATGTTGATTGCTGCAACTTGTAGGCTAGGGTTGCTTCATTTTGCATTCCAGTTAATTGATGAAATGCTTCGGAGACGGTGTCATCCAGATGCTATAACCTACACGGAACTAATCAAAGGTTATTGCCGAAAGGGGTACTTCAATGAAGCAGAAGAAATCTTTTTCAACTTGTGGATTTCTGGACTACAAGTTCAGGATGCTCCATGTCAGATTCTGGTTAAAAGATATTGCAGAAAGCATGGCCGTCAGAGGTCACTTCACCTCTTTGATAGTCTTTTGAAGGGGCAAGAGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_88924.p1 GENE.R_Transcript_88924~~R_Transcript_88924.p1 ORF type:complete len:584 (+),score=93.55,PPR_1|PF12854.3|0.033,PPR_1|PF12854.3|6.1e-07,PPR_1|PF12854.3|3.1e-10,PPR_1|PF12854.3|5.2e-08,PPR_1|PF12854.3|0.76,PPR_1|PF12854.3|7.7e-06,PPR_1|PF12854.3|3.1e-06,PPR_1|PF12854.3|4.4,PPR_1|PF12854.3|7.5e+02,PPR_1|PF12854.3|0.0028,PPR_1|PF12854.3|4.7e-05,PPR_1|PF12854.3|9.3e-10,PPR_1|PF12854.3|2.3e-09,PPR_1|PF12854.3|2.9e+03,PPR_2|PF13041.2|1.9e-05,PPR_2|PF13041.2|9.2e-06,PPR_2|PF13041.2|1.8e-14,PPR_2|PF13041.2|0.0061,PPR_2|PF13041.2|0.003,PPR_2|PF13041.2|7.3e-11,PPR_2|PF13041.2|4.8e-11,PPR_2|PF13041.2|2.7e+02,PPR_2|PF13041.2|3.7e-08,PPR_2|PF13041.2|3.9e-06,PPR_2|PF13041.2|3e-17,PPR_2|PF13041.2|7.3e-05,PPR|PF01535.16|0.012,PPR|PF01535.16|9.4e-05,PPR|PF01535.16|9.9e-07,PPR|PF01535.16|0.0002,PPR|PF01535.16|0.0049,PPR|PF01535.16|1.9e-07,PPR|PF01535.16|0.014,PPR|PF01535.16|3.9e+03,PPR|PF01535.16|0.00019,PPR|PF01535.16|0.00055,PPR|PF01535.16|7.5e-06,PPR|PF01535.16|5.3e-05,PPR_3|PF13812.2|12,PPR_3|PF13812.2|0.0022,PPR_3|PF13812.2|0.0021,PPR_3|PF13812.2|75,PPR_3|PF13812.2|0.016,PPR_3|PF13812.2|7.3,PPR_3|PF13812.2|0.18,PPR_3|PF13812.2|5.8e+02,PPR_3|PF13812.2|3.1,PPR_3|PF13812.2|0.22,PPR_3|PF13812.2|1.1,PPR_3|PF13812.2|1.6 R_Transcript_88924:166-1917(+)
MACTSNLSLFEIAGARLSSLFSFRHWIFGYDAMLMFVRDVAMSVRDSCQPMIRGSHSENNDFNGKEEHDAVFNLLDSILKESLDRLKTMRETASVPAIVLKKFSGAELLECEAMIRAFCLEGKLDAALWLRSKMMVKNYIPTVFTHNHLVHAFCKVGNLEKADYLIREMLNQGPFPSCVTFNTYIKGYCLKGDVDKALSLFSSMPIHRIKPNRITCKILLHALCKEGLVEDAKKLFVEIVGEKCEKTSDTITSTILMDCYFKNGDVAKALHYWTNMLQDGTQVDVVAYNVLIHGFCKNKCIKLALCCFGEMVKRGILPDLVTCNTIISYFCRIGKFHEVWNILGVMSSFEVSPDHFTYKLIVLSLCLRGFYKRRRLCLRDLSKKKRRHLHERLAVAREVLNNMLENSVVPEPRIWNVIIHGYWRCGDLGSAFSVRDQMIACGLSPDVVTYNTIMYVLLQEGNFNGALSLKKEMERIHQLPDIVTYNMLIAATCRLGLLHFAFQLIDEMLRRRCHPDAITYTELIKGYCRKGYFNEAEEIFFNLWISGLQVQDAPCQILVKRYCRKHGRQRSLHLFDSLLKGQE*

Click here to download the sequence:
Link to NCBI Protein BLAST