Transcript Information: R_Transcript_89395.p1


Annotated TAIR IDAT3G16890.1
Annotated Gene Namepentatricopeptide (PPR) domain protein 40
Annotated Gene Symbol(s)PPR40
Annotation TypeOrtholog
Chromosome Positionchr3:5768401-5770380 | Reverse length=659
E-Value5.4E-174
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.8799981037296
Replicate 21.4325833972741
Replicate 32.1978746094389
Condition 2: 8 Hour
Replicate 12.6104333632458
Replicate 21.5256891661363
Replicate 34.2573073949735
Condition 3: 24 Hour
Replicate 13.0838845529752
Replicate 22.8215683015664
Replicate 34.1068614337888


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_89395.p1 GENE.R_Transcript_89395~~R_Transcript_89395.p1 ORF type:complete len:469 (+),score=76.85,PPR_2|PF13041.2|3.6e-18,PPR_2|PF13041.2|1.1e-15,PPR_2|PF13041.2|0.4,PPR_2|PF13041.2|1.4e-13,PPR_2|PF13041.2|6.2e-13,PPR_2|PF13041.2|4.6e-20,PPR_2|PF13041.2|5.7e-14,PPR_2|PF13041.2|3.1e-13,PPR_2|PF13041.2|1.1e-06,PPR_2|PF13041.2|11,PPR_1|PF12854.3|5.4e-14,PPR_1|PF12854.3|1.5e-15,PPR_1|PF12854.3|47,PPR_1|PF12854.3|5e+03,PPR_1|PF12854.3|3e+03,PPR_1|PF12854.3|0.034,PPR_1|PF12854.3|1e-05,PPR_1|PF12854.3|7.9e-12,PPR_1|PF12854.3|9.7e-10,PPR_1|PF12854.3|3.7e-09,PPR_1|PF12854.3|1e-05,PPR_1|PF12854.3|36,PPR|PF01535.16|4.3e-07,PPR|PF01535.16|3.5e-08,PPR|PF01535.16|3.3e+03,PPR|PF01535.16|3.2e+03,PPR|PF01535.16|1.9e+02,PPR|PF01535.16|4.5e+02,PPR|PF01535.16|0.00021,PPR|PF01535.16|0.0024,PPR|PF01535.16|7.3e-08,PPR|PF01535.16|6.3e-06,PPR|PF01535.16|1.4e-05,PPR|PF01535.16|0.002,PPR|PF01535.16|8.3,PPR_3|PF13812.2|5.6e-05,PPR_3|PF13812.2|6.2e-07,PPR_3|PF13812.2|1.2e+03,PPR_3|PF13812.2|1.5e+02,PPR_3|PF13812.2|1.5e-06,PPR_3|PF13812.2|0.099,PPR_3|PF13812.2|1.2e-05,PPR_3|PF13812.2|0.00013,PPR_3|PF13812.2|0.00042,PPR_3|PF13812.2|0.015,PPR_3|PF13812.2|2.4e+03,MRP-S27|PF10037.5|0.12,MRP-S27|PF10037.5|6.3e+02,MRP-S27|PF10037.5|0.0048,MRP-S27|PF10037.5|2.2,MRP-S27|PF10037.5|36,MRP-S27|PF10037.5|3e+03 R_Transcript_89395:847-2253(+)
ATGCCTTCTGATTGTTGTAAACCTGATAGGTTTACTTATAATATCTTGATTCATGGGGTTTGCAAGGCTGGTGTCGTTGATGAAGCACTTCGGTTGGTTAAACAAATGGAGAATTTAGGTTATGTTCCTAATGTGTTTACGTATACGATTTTAATTGATGGGTATTGTAGTGCGAATAGGATGGATGATGCCTTTAGGCTTTTGGAGACAATGAGAGAAAAGAAAGTGGCTCCAAATGATGCCACGTTTAGGTCATTGGTACATGGAGTGTTTCATTGTCTTGGACCAAGAAAGGCATTTGAAGTGTTATCTGCTTTTTTTGAGAGGGAATCAGTTTTGCCTAAAGTGGCTTGTGACACTATATTGTATTGCCTGTCAAATGAATCAATGGCGAATGAGGCTGCCTTTTTTTTGAGAAAATGTAGGGGGAAAGGCTATATGCCTGACAGTTCAGTTTTTAATGTCGCAATGACCTGTTTAATAAAGAAGCTTGATCTTGAGGAGACTTGTGAAATTTTGGATAGTTTTCTTGGACAAGGTCTGAATCTAGCTTTGCATACCTATGTTGCTATTATTGAAGCATTGTTCAGAGGTGGATATGCTAGACAAGGAAGTCATTATCTGGACCAGATTTTCAAGGCTGGTCTCATATCTAATGTATTCTCATATAATATGGTAATCGATTGCTTGTTGAAAGCTAAGATCACTGAGAGGGCACTAACACTGTTTACAGAGATGCAGCAAAGAGGCATCACTCCAAATCTTGCTACTTTTAATACACTAATTGATGGACATTTGAAAGATGGGGAAATAGGAAGGGCACAAGAACTTCTGATGATGCTCTTGCAGCATGGATTCAAGCCAGATATTTTCACTTTTAATTCATTAGTGGATGGCCTTTGTAGGGCAAACAAGATTCAGGATGCTTTTGATTGTTTTGCAGAAATGAAGGAGTGGGGGGTTAGCCCGAATACTGTCACGTACAATATCTTAATCCGCTGTTTGTGCATTGTTGGGGATATTGCTAGGTCTATGGCATTGTTCAGAAAGATGCAAGCTGATGGAATTAGCCCAGATATACACTCATTCAATTCACTGATTCAAAGCTTTTGCAAAATGAATAAGATTGCAAAGGCTCGCAACCTGTTTGATTCCATGCTTGCATTAGGACTGACTCCAAATAATGTCACATATGGTTCTCTCATTAAATTGGCATGTGACACTGGGAGGTATCATGATGCGAGGGATATTTTCTTGTCAATGGAAGCTAATCAATGTGTTCCAGATGCAACTATGTGTAATTTATTTGTTGATACTCTAGTAAAACTGGGTCAGCTAAAAGAAGCCAAAGATTTCACACGCAAATGTGAAAAATGGGGTATATTTGTGGAGCCAATCAAAATTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_89395.p1 GENE.R_Transcript_89395~~R_Transcript_89395.p1 ORF type:complete len:469 (+),score=76.85,PPR_2|PF13041.2|3.6e-18,PPR_2|PF13041.2|1.1e-15,PPR_2|PF13041.2|0.4,PPR_2|PF13041.2|1.4e-13,PPR_2|PF13041.2|6.2e-13,PPR_2|PF13041.2|4.6e-20,PPR_2|PF13041.2|5.7e-14,PPR_2|PF13041.2|3.1e-13,PPR_2|PF13041.2|1.1e-06,PPR_2|PF13041.2|11,PPR_1|PF12854.3|5.4e-14,PPR_1|PF12854.3|1.5e-15,PPR_1|PF12854.3|47,PPR_1|PF12854.3|5e+03,PPR_1|PF12854.3|3e+03,PPR_1|PF12854.3|0.034,PPR_1|PF12854.3|1e-05,PPR_1|PF12854.3|7.9e-12,PPR_1|PF12854.3|9.7e-10,PPR_1|PF12854.3|3.7e-09,PPR_1|PF12854.3|1e-05,PPR_1|PF12854.3|36,PPR|PF01535.16|4.3e-07,PPR|PF01535.16|3.5e-08,PPR|PF01535.16|3.3e+03,PPR|PF01535.16|3.2e+03,PPR|PF01535.16|1.9e+02,PPR|PF01535.16|4.5e+02,PPR|PF01535.16|0.00021,PPR|PF01535.16|0.0024,PPR|PF01535.16|7.3e-08,PPR|PF01535.16|6.3e-06,PPR|PF01535.16|1.4e-05,PPR|PF01535.16|0.002,PPR|PF01535.16|8.3,PPR_3|PF13812.2|5.6e-05,PPR_3|PF13812.2|6.2e-07,PPR_3|PF13812.2|1.2e+03,PPR_3|PF13812.2|1.5e+02,PPR_3|PF13812.2|1.5e-06,PPR_3|PF13812.2|0.099,PPR_3|PF13812.2|1.2e-05,PPR_3|PF13812.2|0.00013,PPR_3|PF13812.2|0.00042,PPR_3|PF13812.2|0.015,PPR_3|PF13812.2|2.4e+03,MRP-S27|PF10037.5|0.12,MRP-S27|PF10037.5|6.3e+02,MRP-S27|PF10037.5|0.0048,MRP-S27|PF10037.5|2.2,MRP-S27|PF10037.5|36,MRP-S27|PF10037.5|3e+03 R_Transcript_89395:847-2253(+)
MPSDCCKPDRFTYNILIHGVCKAGVVDEALRLVKQMENLGYVPNVFTYTILIDGYCSANRMDDAFRLLETMREKKVAPNDATFRSLVHGVFHCLGPRKAFEVLSAFFERESVLPKVACDTILYCLSNESMANEAAFFLRKCRGKGYMPDSSVFNVAMTCLIKKLDLEETCEILDSFLGQGLNLALHTYVAIIEALFRGGYARQGSHYLDQIFKAGLISNVFSYNMVIDCLLKAKITERALTLFTEMQQRGITPNLATFNTLIDGHLKDGEIGRAQELLMMLLQHGFKPDIFTFNSLVDGLCRANKIQDAFDCFAEMKEWGVSPNTVTYNILIRCLCIVGDIARSMALFRKMQADGISPDIHSFNSLIQSFCKMNKIAKARNLFDSMLALGLTPNNVTYGSLIKLACDTGRYHDARDIFLSMEANQCVPDATMCNLFVDTLVKLGQLKEAKDFTRKCEKWGIFVEPIKI*

Click here to download the sequence:
Link to NCBI Protein BLAST