Transcript Information: R_Transcript_89563.p1


Annotated TAIR IDAT5G49890.1
Annotated Gene Namechloride channel C
Annotated Gene Symbol(s)CLC-C, ATCLC-C
Annotation TypeOrtholog
Chromosome Positionchr5:20288489-20292143 | Reverse length=779
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 140.865185892237
Replicate 225.796220945694
Replicate 334.550264496879
Condition 2: 8 Hour
Replicate 131.146770737492
Replicate 235.411869071609
Replicate 348.357930720469
Condition 3: 24 Hour
Replicate 140.080871622314
Replicate 238.702331693044
Replicate 338.352402082277


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_89563.p1 GENE.R_Transcript_89563~~R_Transcript_89563.p1 ORF type:complete len:783 (+),score=144.60,Voltage_CLC|PF00654.16|95,Voltage_CLC|PF00654.16|1.5e-89,CBS|PF00571.24|0.21,CBS|PF00571.24|0.00054 R_Transcript_89563:995-3343(+)
ATGGATCCACATGATGATGTTGACCACAATGATGATGTCAATGATGTCGAAAACCTTGGAGAATTAGATGGGAAGGAGGACGAGGATAGATTTTGGTCAGACTTTTCAGAGAGAAACTTGTCAATTCGACAACCCCTTCTGAGAAAGAAGACAAATACTACCTCACAGATTGCTGTTGTTGGTGCAAATGTTTGCCCCATTGAGAGCCTTGACTATGAGATTATTGAAAATGAATTGTTTAAGCAAGACTGGAGGTCAAGGAAAAAGGTTCAAATATTTCAGTATATTTTCCTCAAGTGGGCGTTGGCCCTTCTCATTGGACTTGGCACTGGACTTGTTGGCTTCTTTAGTAACATTGCAGTTGAGAACATAGCTGGTTTCAAATTGTTACTTACTAATGACCTGATGATTGAGGGCAAATATTTCAAGGCATTTCTTGTATTTGCTGGATGCAACCTAGGGTTGGCCATGGTTGCTGGAACACTTTGTGCCTTTGTTGCTCCTGCTGCTGCCGGATCTGGTATTCCTGAGGTCAAAGCTTATCTTAATGGTGTGGATGCTCCCTCAATATTGGCTCCAAGTACACTCTTTGTAAAGATAATTGGTTCTGTTCTTGGTGTTTCTGCGGGATTTGTGGTCGGTAAGGAAGGACCCATGGTGCACACTGGTGCCTGCATTGCCAATTTACTAGGGCAGGGTGGTTCCCGCAAGTATGGCCTGACCTGGACATGGCTTAGATACTTCAAGAATGATCGAGATCGGCGGGATTTGATCACTTGTGGTTCGGCCGCAGGAGTCGCTGCTGCTTTCCGTGCACCTGTTGGTGGTGTCCTTTTTGCCCTTGAAGAGGCTGCCTCCTGGTGGCGGAGTGCTCTTCTGTGGAGGACATTTTTCACAACAGCTGTGGTTGCCATAGTTTTAAGAGGCTTCATTCAATATTGTGGGACTGGGATGTGTGGTTTGTTTGGTAAAGGTGGGCTGATAATGTATGATGTGAGTGCAGCAGAAGCAACATACACCGCTTATGATATTCTGGCCGTAGTGTTTCTTGGAGTTATTGGAGGTGTTCTGGGAAGCTTCTATAACTATCTCGTGGACAAGGTTCTTCGCACTTATAGTATGATCAATGAGAAAGGTCCCTCCTTCAGAGTTCTGCTTGTGCTCATTGTATCCATTCTCACTACATGTTGTGCCTTTGGCATTCCATGGATGGCAAAGTGCACTCCCTGTCCCACAGATCTGAATGTAAAATGCCCGACTATTGGTGAATCCGGAAACTTCAAGAGCTTTCAATGCCCACCTGGTCACTACAATGATCTTGCTTCTCTCTTTTTCAACACCAACGATGATGCTATCCGTAATCTTTTCAGTACCAGCACAGTTAGAGAATTTCAGATCTCTTCACTCTTCATTTTCTTCGCTACAATCTTTGCCCTCGGGATTATCACCTATGGAATTGCCGTCCCAGCAGGGTTGTTCATTCCTGTGATTTTAGCTGGATCTGTCTATGGTCGGCTTGTTGGCAGGCTTTTTGAACATGTGACTGTCCTCGACACGGGCCTCTTCTCCATTCTTGGGGCTGCCTCGTTCCTTGGAGGTACAATGAGAATGACAGTTTCTTTGTGTGTGATACTGCTCGAGCTTACCAACAATCTATTGTTGCTTCCCCTTGTGATGATCTCTCTCCTTATATCAAAAACTGTGGCCGATATCTTCAACCATGGTGTATATGACCAGATAGTGAAATTGAAAGGGTTGCCGTACATGGAAGCCCATCCGGAGCCCTACATGAAGCACTTGATGGCTGGGGATGTCGTTTCTGGGCCGTTAGTCACATTTTGTGGTGTTGAAAGGGTGGGCAACATTCTGCATGCTTTGAAAGCAACAGGGCATAATGGATTTCCTGTCATCGACGAACCACCTTTCTCAGATGCACCCGAGTTGTGTGGCATAGTTTTGAGGTCACATCTGCTTGTTTTGCTCAAGGCCAAGTACTTCACCAAGGAGAGGGTGCGTTCGGGGAGAGACATTGTGAAGAAGTTTTCTCCATATGACTTTGCTAAGCCGGGAACAGGAAAGGGGCTCAAGCTGGAGGATATAATTATCGAAGAGGATGAGATGGACATGTACATCGATCTCCATCCGATTTCTAATACATCCCCATACACAGTTGTTGAGACAATGTCATTAGCCAAAGCTCAGGTTCTGTTCAGGCAACTTGGACTCCGGCATATGTGCGTGGTACCAAAGAGCCAAGGGAGACCTCCAATTGTCGGAATTTTGACTCGACATGACTTCATGCCGGAACACATATTGGGACTCTACCCCCATATCAGGCTACACAAGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_89563.p1 GENE.R_Transcript_89563~~R_Transcript_89563.p1 ORF type:complete len:783 (+),score=144.60,Voltage_CLC|PF00654.16|95,Voltage_CLC|PF00654.16|1.5e-89,CBS|PF00571.24|0.21,CBS|PF00571.24|0.00054 R_Transcript_89563:995-3343(+)
MDPHDDVDHNDDVNDVENLGELDGKEDEDRFWSDFSERNLSIRQPLLRKKTNTTSQIAVVGANVCPIESLDYEIIENELFKQDWRSRKKVQIFQYIFLKWALALLIGLGTGLVGFFSNIAVENIAGFKLLLTNDLMIEGKYFKAFLVFAGCNLGLAMVAGTLCAFVAPAAAGSGIPEVKAYLNGVDAPSILAPSTLFVKIIGSVLGVSAGFVVGKEGPMVHTGACIANLLGQGGSRKYGLTWTWLRYFKNDRDRRDLITCGSAAGVAAAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAIVLRGFIQYCGTGMCGLFGKGGLIMYDVSAAEATYTAYDILAVVFLGVIGGVLGSFYNYLVDKVLRTYSMINEKGPSFRVLLVLIVSILTTCCAFGIPWMAKCTPCPTDLNVKCPTIGESGNFKSFQCPPGHYNDLASLFFNTNDDAIRNLFSTSTVREFQISSLFIFFATIFALGIITYGIAVPAGLFIPVILAGSVYGRLVGRLFEHVTVLDTGLFSILGAASFLGGTMRMTVSLCVILLELTNNLLLLPLVMISLLISKTVADIFNHGVYDQIVKLKGLPYMEAHPEPYMKHLMAGDVVSGPLVTFCGVERVGNILHALKATGHNGFPVIDEPPFSDAPELCGIVLRSHLLVLLKAKYFTKERVRSGRDIVKKFSPYDFAKPGTGKGLKLEDIIIEEDEMDMYIDLHPISNTSPYTVVETMSLAKAQVLFRQLGLRHMCVVPKSQGRPPIVGILTRHDFMPEHILGLYPHIRLHK*

Click here to download the sequence:
Link to NCBI Protein BLAST