Transcript Information: R_Transcript_89626.p1


Annotated TAIR IDAT1G66730.1
Annotated Gene NameDNA LIGASE 6
Annotated Gene Symbol(s)AtLIG6, LIG6
Annotation TypeOrtholog
Chromosome Positionchr1:24884991-24891823 | Forward length=1396
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 15.2771718405495
Replicate 23.3152053288892
Replicate 34.0462514138842
Condition 2: 8 Hour
Replicate 13.1600359232566
Replicate 23.4500567512716
Replicate 35.0253918372232
Condition 3: 24 Hour
Replicate 14.7339097816318
Replicate 23.3233951752925
Replicate 34.4185705207868


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_89626.p1 GENE.R_Transcript_89626~~R_Transcript_89626.p1 ORF type:complete len:1387 (+),score=277.78,DNA_ligase_A_M|PF01068.17|1.8e-46,DNA_ligase_A_N|PF04675.10|7.6e-34,DRMBL|PF07522.10|1.1e-18,DNA_ligase_A_C|PF04679.11|1.2e+04,DNA_ligase_A_C|PF04679.11|1.4e-17 R_Transcript_89626:796-4956(+)
ATGTCCACCAAAACCCTAACCCTACAAACCTCCGATCTCTATCACCAATCTCAAAACCCCCTCTCTCTATCTCCAATCCCCTCCGATTTCCCTCTCTCCAAACTCATCCCCAAAACCCGCTTTATTATCGACGGTTTTCGAAATTCCGGCGAATTTTCAATTTCCTACTTTCTTTCTCACTTTCACTCCGATCACTACACCGGTCTCACTCCTAACTGGTCTAAAGGCATCGTCTTTTGCTCCGAAACCACTGGTCGCCTTGTTGTCGACATTCTTAGGGTTTCGCCGTTGCTCGTTTTCCGATTGCCGGTTAATCAGACCGTGGTTATCGACGATTGTGAGGTAACGTTAATTGACGCTAACCATTGTCCTGGTGCTGTTCTGTTCTTGTTTAAAGTTCCTGTTGGTGATGGCAAATTTGAGCGCTTTGTTCATACTGGTGATTTTAGGTATTGTAGTGCTATGAAATTAGAACCTGTGTTGAGTCAATTTGTTGGTTGTGATGCTGTTTTTCTTGACACTACTTATTGTCACCCGAAATTCATGTTCCCATCACTAGAGGAGTCGATTGATTACGTGGTCAGTGTGGTGGATAGGATAGGTGCTGAGAATAGGAATGTAGATAAGAGTGTTTTGTTTCTTGTTGCTACTTATGTCGTTGGAAAAGAGAGGATTTTGCTGGAAATTGCGCGTCGGTGTGGGTGTAAGATATTTGTGGATGGTAGGAAAATGGAGGTTTTGCGGGTGTTAGGGTATGGAGATGAGGAGGGTGTGTTTACCGAAGAGGAATCTGGTAGTAATGTTCATGTTGTTGGGTGGAATGTGTTGGGGGAGACTTGGCTGTATTTTCGGCCTAATTTTTTGAAGATGAAGGATATTATGGTTGAAAAAGGATATTCTAAGGTTGTTGGGATTGTTCCTACTGGTTGGACTTACGTAGTAAAGAGAAACAAGTTTGTGGTTAGAACTAAGGATACACTTGAGATTCATCTTGTGCCTTACAGTGAGCATTCAAATTATGATGAACTCAGAGAGTATGTGAAGTTTTTGAAGCCGAAGCAGGTGATTCCTACCGTGGGTTCTCAAGGAGATAACATAGACAGCAATCATGCTGCAAAGATGCGAAAGCATTTTGCTGGGCTGGTTGACGAAATGGCCAATAAGAAGGAGTTTTTAATGGGTTTTCACCGTGTATCCCAGGGTAAGGGTCAGAGCAAGGTAGATGATCCTGTGATCAAGTTAGATGAGATTTTGGAATCGCCAAAAGAAGAGCCAGGTTTGAGCGATGTGAATTCTGATAAAGAAGCTGACTCGCATACCATGATAGATCCTTCTACTTCTTTGGACGAGACTGGTTCACTTCATTTGGCCTTATTGAGTGATAAGGAAAAGGAGGAGATTGTGCAAGAGCTACGTGATTGTCTGCCCATCTGGGTCTCTGATGATCAAGTGCTGGATCTCATCCGAATCTCTGGCAGAAACATTGTTGACTCTGTATCTTATTTTTATGAACATGAAACTGAGTTTCATGAACAGAGCGCAACCTCTCTATCTTTATCCCAGTCAAAATCAGAAAGTAGTTGCACCGTAGTTCCAAGGACTGGCTCTGATGAGGGCAGTCTTCCTACAACCGTAAAGTTGGCCGATCAGAAACTCAAATTCTCCCCACTGAAGCCTTCAGTTCGGAGCAGTGTTTCTCCTGGAAAAAGGAGGAGAAATACTGAAAATAAGCATACTAAGAAGGCCAAAGTTAGTTCAAATCTTCAACCTAGTGGCAAACAATCTACTATAACAAAGTTTTTTAGTAAACATAAAAATGTTTGTCAGGGGAACAATTCTGAAACTGTTCCTGGTAAATGCACTGCTGACAAGAGCTTGTCTGCAGTCCATTCTACTAAACCTTATAAAGAAGAATTGGAGAAATTTATTCAGATCACTAATGGCAGTGAATCAACAAGAAGTTATGCTGCTGAACTCGTAGAAAAGGCCCAAGGAAATATCGAATTTGCACTGGATATGTATTACAATAATTCTGAGGTACCCATTTGTGATGACAGTAGAGTAGATATTTGCAGCAAATCCATACTTGTTGAAGGCGTTGAACCCAGCTGCTCTAACCTAGGGAAAGAAACCTCTTCTGAACCAGGTAAGAGGGTCCATAAATCAAAAGAAGAAGTATTGGCTGAGAATGTAGCTGTTAGCTATATATCATTACCATTGGAAAAGTATTCTCCTATAGATCATGCCTGTTGGAAGCAAGGTCAGCCTGCTCCGTATATGCATATGGCACGGACGTTTGACCTCGTTGAAGGTGAAAAGGGCAAACTGAAAGCTACCTCTATGCTTTGCAATATGTTTAGAAGCTTGCTGGCTTTGTCTCCTGAGGACATTCTACCTGCTGTCTATCTCTGCACAAATAAGATTGCCGCTGACCATGAAAATATGGAACTGAACATCGGCGGAAGTTTGGTTGCATCTGCTCTAGAAGAGGCATGTGGGACAAGTAGAGCTAAGATCAGAGAGATGTACAACATTTTTGCTGATCTTGGTGATGTTGCACAAGAATGTCGGCATACACAGTCACTGCTAGTTCCTCCATCACCTCTTTTGATTCGAGATGTTTATGCTGTGCTTCGGAAAATTAGCATGCAGACGGGCAGTGGAAGCACAGGTCGGAGGAAAAGCTTAATTGTGCGTCTTATGCGATCTTGCAGAGAGAAGGAGATGAAGTTTCTTGTCAGGACTTTGGTAAGGAACTTACGCATTGGAGCTATGATGAAGACTGTTCTTCCGGCACTTGCTCAAGCTGTTGCATTGAATTCCCTCTCTTCTTGCATTGAAGGAGCAGCTAAAAATCCTAAGGACTTGCTTCAGGGCCTTTCTGCTGCTGTCGTTGAAGCTTATAATGTTCTTCCTGATTTGAATTTGCTGGTTCCTTCACTTATGAGCAAAGGCTTAGAATTTTCAGTAACAACATTGACTATGATACCGGGAATTCCTATCAGGCCCATGCTTGCAAAAATAACTAATGGTGTTGAACAAGCAGTGAAGTTGTTTCAAAATAAGGCTTTCACTTGTGAGTATAAGTATGATGGTCAACGCGCCCAAATTCACAAGCTTGATGATGGATCTGTACGTATATTCTCAAGAAATGGGAACGAGACAACGTCAAGATTTCCAGATATGGTGCATGTTATTCAGGAATTATCTAGACCTTCTTCAGCGTCTTTTGTAGTGGATGCAGAGGTTGTTGGAATTGATCGCAAGAATGGATGCAAGTTTTTATCTTTTCAAGAACTTTCTGCACGGGAGAGAGGAGGCAAGGCTTCATCTGTTACATTGGATAGAATAAAGGTTGACATCTGTGTCATTCTGTTTGATGTCATGTTCATCAATGGAGAGAAGCTGCTGGCTTACTCTCTTCGGAAAAGACGGCAATGTATGAAAGATCTATTTAGGGATGAGAAGCCTGGTTATTTTGAGTATGCGAAGGAGATCACTGTAGAAGCAGATGATGCTTGTCCAGATTGTGAAGCTACTCTAACAAGGATAAAGGCTTTTCTTGAAGATGCATTTCAGTCTTCCTGTGAAGGAATTATGGTTAAATCGCTAGATGTTGATGCTAGCTACTTTGCTTCAAAACGTGCAGACTCATGGCTGAAGGTGAAGAGAGATTATGTGGAAGGGCTGGGGGACTCCCTTGACTTGGTTCCTATTGGTGCTTGGCATGGCAATGGGAGAAAAGCCGGATGGTATAGTCCATTCCTTATGGCTTGTTATAATCCTGATACAGAGGAATTTGAAAGTGTATGCCGTGTAATGTCTGGGTTTTCTGATTCTTTCTACAAGGAGATGAAAGACTTCTTCTCTGAGGACAAGATATTGTCCAAAAAGCCTGTATACTATAGAACGAATGAAACTCCTGCTATTTGGTTTTCAGCCGATTTGGTTTGGGAAATAAGAGGTGCAGACCTCACTCTATCACAAGTTCACAAGGCTGCAGTTGGACTTGTTCATGAGTCACGGGGCATTTCAATGAGGTTTCCGAGATTCATTTGCTCTGTGCCTGATAGAAGACCGGAAGACTGCAGTACCTCTACAGATATTGCTGAAATGTTTCAATCCCAGACTCGGAAAATGGATGTAAATGTTCCTCATTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_89626.p1 GENE.R_Transcript_89626~~R_Transcript_89626.p1 ORF type:complete len:1387 (+),score=277.78,DNA_ligase_A_M|PF01068.17|1.8e-46,DNA_ligase_A_N|PF04675.10|7.6e-34,DRMBL|PF07522.10|1.1e-18,DNA_ligase_A_C|PF04679.11|1.2e+04,DNA_ligase_A_C|PF04679.11|1.4e-17 R_Transcript_89626:796-4956(+)
MSTKTLTLQTSDLYHQSQNPLSLSPIPSDFPLSKLIPKTRFIIDGFRNSGEFSISYFLSHFHSDHYTGLTPNWSKGIVFCSETTGRLVVDILRVSPLLVFRLPVNQTVVIDDCEVTLIDANHCPGAVLFLFKVPVGDGKFERFVHTGDFRYCSAMKLEPVLSQFVGCDAVFLDTTYCHPKFMFPSLEESIDYVVSVVDRIGAENRNVDKSVLFLVATYVVGKERILLEIARRCGCKIFVDGRKMEVLRVLGYGDEEGVFTEEESGSNVHVVGWNVLGETWLYFRPNFLKMKDIMVEKGYSKVVGIVPTGWTYVVKRNKFVVRTKDTLEIHLVPYSEHSNYDELREYVKFLKPKQVIPTVGSQGDNIDSNHAAKMRKHFAGLVDEMANKKEFLMGFHRVSQGKGQSKVDDPVIKLDEILESPKEEPGLSDVNSDKEADSHTMIDPSTSLDETGSLHLALLSDKEKEEIVQELRDCLPIWVSDDQVLDLIRISGRNIVDSVSYFYEHETEFHEQSATSLSLSQSKSESSCTVVPRTGSDEGSLPTTVKLADQKLKFSPLKPSVRSSVSPGKRRRNTENKHTKKAKVSSNLQPSGKQSTITKFFSKHKNVCQGNNSETVPGKCTADKSLSAVHSTKPYKEELEKFIQITNGSESTRSYAAELVEKAQGNIEFALDMYYNNSEVPICDDSRVDICSKSILVEGVEPSCSNLGKETSSEPGKRVHKSKEEVLAENVAVSYISLPLEKYSPIDHACWKQGQPAPYMHMARTFDLVEGEKGKLKATSMLCNMFRSLLALSPEDILPAVYLCTNKIAADHENMELNIGGSLVASALEEACGTSRAKIREMYNIFADLGDVAQECRHTQSLLVPPSPLLIRDVYAVLRKISMQTGSGSTGRRKSLIVRLMRSCREKEMKFLVRTLVRNLRIGAMMKTVLPALAQAVALNSLSSCIEGAAKNPKDLLQGLSAAVVEAYNVLPDLNLLVPSLMSKGLEFSVTTLTMIPGIPIRPMLAKITNGVEQAVKLFQNKAFTCEYKYDGQRAQIHKLDDGSVRIFSRNGNETTSRFPDMVHVIQELSRPSSASFVVDAEVVGIDRKNGCKFLSFQELSARERGGKASSVTLDRIKVDICVILFDVMFINGEKLLAYSLRKRRQCMKDLFRDEKPGYFEYAKEITVEADDACPDCEATLTRIKAFLEDAFQSSCEGIMVKSLDVDASYFASKRADSWLKVKRDYVEGLGDSLDLVPIGAWHGNGRKAGWYSPFLMACYNPDTEEFESVCRVMSGFSDSFYKEMKDFFSEDKILSKKPVYYRTNETPAIWFSADLVWEIRGADLTLSQVHKAAVGLVHESRGISMRFPRFICSVPDRRPEDCSTSTDIAEMFQSQTRKMDVNVPH*

Click here to download the sequence:
Link to NCBI Protein BLAST