Transcript Information: R_Transcript_89687.p1


Annotated TAIR IDAT3G10650.1
Annotated Gene NameBEST Arabidopsis thaliana protein match is: nucleoporin-related (TAIR:AT5G20200.1); Has 61042 Blast hits to 31782 proteins in 2093 species: Archae - 202; Bacteria - 16480; Metazoa - 16017; Fungi - 12552; Plants - 1653; Viruses - 629; Other Eukaryotes - 13509 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:3325562-3330819 | Reverse length=1309
E-Value1.7E-77
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 14.448200568797
Replicate 21.4820917940916
Replicate 33.0798974919197
Condition 2: 8 Hour
Replicate 13.3333698499611
Replicate 24.2091071701055
Replicate 36.5284784416182
Condition 3: 24 Hour
Replicate 15.0931605950537
Replicate 23.5584955520931
Replicate 35.9961275024609


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_89687.p1 GENE.R_Transcript_89687~~R_Transcript_89687.p1 ORF type:5prime_partial len:595 (+),score=133.84 R_Transcript_89687:2-1786(+)
CCAAATCCAATATCTAATTTTCAATTTCGTCTCTCCCCTCCCTTTCCCCATTCTCTCTCTACAATAAAAACCCTAATTTCAGTGTCTGCGCTCTTTCTCTCTCTTTCCCCCTTTTCCCTCCATCGCATTCATTCATTCATTCTCTACTTTCTCTCTCCTCTCATGGAACGAAGCGGTGGTGGAGCCGGTGGGGCATTCCGGAGGAGGCCGTTCAGGAGGGCCAAAGCGACGCCGTACGATCGGCCCCCAACCGCCTTACGACCTGCTCAAGCGGCGGCGGCGGCGGCTGAGAGAAACAATTGGTTCTCATCGAAGTTTCTGGATCCTGCTTCCAGGCTTATCACTGCCGGTGCTCATAAGCTCTTCGCTTCTGTCTTTCGTGGACGTCTTTTACCCCCTCCTCCTCCTCAGCCACCTCAGCACCCTCCAGATGAGAGCACAGAGATAAGGGATGTGCAGCCAGAAGCCACACCTGTTGTGGTCCCTTCTATTGCCAGGGAGCCAACCATTGGTGGAGGTAATGATGCAAGTAGAATTTCTGACAGTAATGGGGTTTCTGAACTTGAGGATATATTGAAGCAGAAGACCTTTACAAGGTCTGAGATAGATCATTTAACTGCGTTGCTGCTCTCAAGGACAGTTGATGATTCGGTTGGTGCTGGGAAAGGAAGGTCTGAACCAAAATTTCCAGACCAGTGGGCTATTCACGGTAGACACAGTAATGAGACTGATCTTGTTGTTCATGAAAATGAAATAGATCATGGGGCTCCTGGAGTAATCACAACTCCTACATTGAGATCAAAAGTTGTTGAAGAGGATGTTGCTTCACCTGCTGAACTTGCCAAAGCCTACATGGGTAGGAGGCCTACAAGAGTATCCCCATCAGTGTTGAGTTTGCAAAACCAAATGCCCCGGGAAGACTTATCTGCTTCTCATAATCCACCTTTTAAGCTGAGGTCCCCAGGAACGTCTCTTCTTCAGAAGCCTGTCAGTGATATTGGAACCTCTGAAAATGGTTTTGTGACTCCAAGATTTCGAGGAAGATCTGCAATATACAGCATGGCTCGTACTCCATATTCTAGGATTCATCCAGCAACATCGTTAAAGGCTGCTGAAAATGCTTTTGATGCCCGTGCTGGATCATCATCATCTCAAAATAAGACAGAGAATAATCTGTTTAACGGCTCTAGGAAACAGGTTTTGAAGCGCAGGAGTTCTGTTCTGGAAAATGATATCGGTTCTGTTGGTCCCATCCGAAGGATTCGTCAAAAACCTAATCTTTTGCATCCTAAAACTTTAAGCCTACCTGCTTCCGGTGGTCCACGTGCGACGCACGTACCTGGAGCGCTTCTTGACGCTCCGGAACTCTCAACTTCTTTTAGTCAGATTTCTCATATTCATTCATTGTCTAAAGTGACTGCAGATAATAGCAGACCTAGTACTAGTGGTGGTTATGTTCCTTCTCAATCTATCGAGATGGCTGAAAAGATCTTTCAGCAACTCGACAAAATCACTCCGAAAGGAAAATCCTCGGAGATGAAAATCAACATTGCAGGAGGGAATTCATCTGCTAAGATGACACCTCAAATGCTAGGTGGACTGGCTCGTAGAAGCATGGAGACTGTAGATTCCATGAAGGTCTTGCAAAGTATTCGAGATAGTAAGAGAGAAAATGGTCAAGTGGACTCTGTTGATACATGTTTTATTCCACCTAAGATATCATCTAAGGTGGAGGAAACTAGCATGAAAAAGTTTGAGGTTTCCTCTGATAATGTGGCTACCTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_89687.p1 GENE.R_Transcript_89687~~R_Transcript_89687.p1 ORF type:5prime_partial len:595 (+),score=133.84 R_Transcript_89687:2-1786(+)
PNPISNFQFRLSPPFPHSLSTIKTLISVSALFLSLSPFSLHRIHSFILYFLSPLMERSGGGAGGAFRRRPFRRAKATPYDRPPTALRPAQAAAAAAERNNWFSSKFLDPASRLITAGAHKLFASVFRGRLLPPPPPQPPQHPPDESTEIRDVQPEATPVVVPSIAREPTIGGGNDASRISDSNGVSELEDILKQKTFTRSEIDHLTALLLSRTVDDSVGAGKGRSEPKFPDQWAIHGRHSNETDLVVHENEIDHGAPGVITTPTLRSKVVEEDVASPAELAKAYMGRRPTRVSPSVLSLQNQMPREDLSASHNPPFKLRSPGTSLLQKPVSDIGTSENGFVTPRFRGRSAIYSMARTPYSRIHPATSLKAAENAFDARAGSSSSQNKTENNLFNGSRKQVLKRRSSVLENDIGSVGPIRRIRQKPNLLHPKTLSLPASGGPRATHVPGALLDAPELSTSFSQISHIHSLSKVTADNSRPSTSGGYVPSQSIEMAEKIFQQLDKITPKGKSSEMKINIAGGNSSAKMTPQMLGGLARRSMETVDSMKVLQSIRDSKRENGQVDSVDTCFIPPKISSKVEETSMKKFEVSSDNVAT*

Click here to download the sequence:
Link to NCBI Protein BLAST