Transcript Information: R_Transcript_89862.p1


Annotated TAIR IDAT1G31840.1
Annotated Gene NameTetratricopeptide repeat (TPR)-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:11424006-11426528 | Forward length=840
E-Value6E-21
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.67603559091551
Replicate 20.43202264231066
Replicate 30.75413127888568
Condition 2: 8 Hour
Replicate 10.30229462897834
Replicate 21.1042410785771
Replicate 30.97107381919766
Condition 3: 24 Hour
Replicate 11.7005783131633
Replicate 20.09076238226575
Replicate 30.99080144673198


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_89862.p1 GENE.R_Transcript_89862~~R_Transcript_89862.p1 ORF type:5prime_partial len:243 (+),score=26.23,PPR|PF01535.16|4,PPR|PF01535.16|4e+03,PPR|PF01535.16|4.6e+03,PPR|PF01535.16|21,PPR|PF01535.16|0.00077,PPR|PF01535.16|0.00027,PPR|PF01535.16|6.4,PPR_2|PF13041.2|2.7e+02,PPR_2|PF13041.2|0.054,PPR_2|PF13041.2|0.0034,PPR_2|PF13041.2|3e-09,PPR_2|PF13041.2|51,PPR_1|PF12854.3|78,PPR_1|PF12854.3|4.8e+02,PPR_1|PF12854.3|0.00023,PPR_1|PF12854.3|3e-06,PPR_1|PF12854.3|6.1e+02,PPR_3|PF13812.2|70,PPR_3|PF13812.2|9.4e+02,PPR_3|PF13812.2|1.5e+03,PPR_3|PF13812.2|17,PPR_3|PF13812.2|0.18,PPR_3|PF13812.2|1.3e+02 R_Transcript_89862:3-731(+)
TCTAACCCCAATACAGTTTATAGGTTCCTTGTTGCTGGGTCTTTTAGGCATGGTAGATTTGATAAGGGCATTGATACTTTCTTGAGGATGTCCTATACTAGGATTGACGTTGCCCCTTATGCCTTGAGAATTAAGGTGGATTCATTGGTTGTTTCTCATAGCATTGATGGGATTATGAGTATATTTGATGAATTGTGTGATCAGTATAGTAAAAAATTGGTGCAGCATTTCAATATTTATGAGTCTGTTATGATGAGTTTTGTTGGTAATCAGCTGTTTGAGATGGCATTGTATTCTCACAGAAAGAAGATTGATAGAGGAAATTTGAAAGATGCATTTAGATGGTATAAAATGATGTTCCACTGTGGTTATTTTCCTTACCTTGTCATTTATTCGATACTTGTTAATGGGTCGAGCAAGAAAGGGCATGTAAAGGAAGCACTTCAGATGTTCTTCCAGGTAAAAATGATTGGTATACTCCCTAATGTACATTTTTTCAATACTTTGATAGATGGCTATTGTAGATTGAATCAAACGGAGGACTTGATTAAGGTGTACAATTTTATGCAAATACATAACATAATATCAGATGCAATAACTCACAGTTTGTTTTTTAAAGCACTGATTGCACGAGGGAAACTCAACATGGCATTGGAGCTCTTCGTTCAATTGATTAAAAAGTTAATCACGCGGGAGGAATTTGGGCTCTTTGGAGCAATATTAATATAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_89862.p1 GENE.R_Transcript_89862~~R_Transcript_89862.p1 ORF type:5prime_partial len:243 (+),score=26.23,PPR|PF01535.16|4,PPR|PF01535.16|4e+03,PPR|PF01535.16|4.6e+03,PPR|PF01535.16|21,PPR|PF01535.16|0.00077,PPR|PF01535.16|0.00027,PPR|PF01535.16|6.4,PPR_2|PF13041.2|2.7e+02,PPR_2|PF13041.2|0.054,PPR_2|PF13041.2|0.0034,PPR_2|PF13041.2|3e-09,PPR_2|PF13041.2|51,PPR_1|PF12854.3|78,PPR_1|PF12854.3|4.8e+02,PPR_1|PF12854.3|0.00023,PPR_1|PF12854.3|3e-06,PPR_1|PF12854.3|6.1e+02,PPR_3|PF13812.2|70,PPR_3|PF13812.2|9.4e+02,PPR_3|PF13812.2|1.5e+03,PPR_3|PF13812.2|17,PPR_3|PF13812.2|0.18,PPR_3|PF13812.2|1.3e+02 R_Transcript_89862:3-731(+)
SNPNTVYRFLVAGSFRHGRFDKGIDTFLRMSYTRIDVAPYALRIKVDSLVVSHSIDGIMSIFDELCDQYSKKLVQHFNIYESVMMSFVGNQLFEMALYSHRKKIDRGNLKDAFRWYKMMFHCGYFPYLVIYSILVNGSSKKGHVKEALQMFFQVKMIGILPNVHFFNTLIDGYCRLNQTEDLIKVYNFMQIHNIISDAITHSLFFKALIARGKLNMALELFVQLIKKLITREEFGLFGAILI*

Click here to download the sequence:
Link to NCBI Protein BLAST