Transcript Information: R_Transcript_90292.p2


Annotated TAIR IDAT5G66810.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: CTLH, C-terminal LisH motif (InterPro:IPR006595); BEST Arabidopsis thaliana protein match is: LisH and RanBPM domains containing protein (TAIR:AT1G61150.1); Has 333 Blast hits to 242 proteins in 88 species: Archae - 0; Bacteria - 0; Metazoa - 104; Fungi - 47; Plants - 152; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:26672926-26676450 | Forward length=750
E-Value9E-16
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.0455904518219
Replicate 21.6290233081611
Replicate 32.7646062616046
Condition 2: 8 Hour
Replicate 12.533020511784
Replicate 22.3131946732261
Replicate 34.0684644493971
Condition 3: 24 Hour
Replicate 11.5832970501865
Replicate 20.3802630843203
Replicate 30.56606132810941


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_90292.p2 GENE.R_Transcript_90292~~R_Transcript_90292.p2 ORF type:complete len:116 (+),score=17.21 R_Transcript_90292:191-538(+)
ATGGACTCAACCACCCCTGTGAATTGGGAAGCTCTTGACGCTCTCGTCATCCAATTCGCCAAATCCGAAAACCTTATCGAAGACTCTTCTCCTTCATCTTCACCTTCTTCATCTTCTCTCTCCCCTTCACCTTCATCACCATCACCATCTTCATCGTCATCATCGTCGTCTTATCAATCACGATTGTTGATTCGGCAGATCAGACGGCTGTTGGAGTCCGGTCATATTGAATCTGCTTTGGATCTCCTTCGCCTTCACGCTCCTTCCATTCTCGACGATCACCGCCTTCTTTTCTTCCTCCAGAAACAGGTTGCCCTAATTTATACTACTCTCTCATTTTTAATTTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_90292.p2 GENE.R_Transcript_90292~~R_Transcript_90292.p2 ORF type:complete len:116 (+),score=17.21 R_Transcript_90292:191-538(+)
MDSTTPVNWEALDALVIQFAKSENLIEDSSPSSSPSSSSLSPSPSSPSPSSSSSSSSYQSRLLIRQIRRLLESGHIESALDLLRLHAPSILDDHRLLFFLQKQVALIYTTLSFLI*

Click here to download the sequence:
Link to NCBI Protein BLAST