Transcript Information: R_Transcript_90297.p1


Annotated TAIR IDAT5G66810.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: CTLH, C-terminal LisH motif (InterPro:IPR006595); BEST Arabidopsis thaliana protein match is: LisH and RanBPM domains containing protein (TAIR:AT1G61150.1); Has 333 Blast hits to 242 proteins in 88 species: Archae - 0; Bacteria - 0; Metazoa - 104; Fungi - 47; Plants - 152; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:26672926-26676450 | Forward length=750
E-Value1.3E-273
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 114.345284806666
Replicate 212.065479675845
Replicate 312.550311161836
Condition 2: 8 Hour
Replicate 111.691138333966
Replicate 213.85744790158
Replicate 314.240066359937
Condition 3: 24 Hour
Replicate 114.16270361371
Replicate 212.083796772443
Replicate 312.053651454334


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_90297.p1 GENE.R_Transcript_90297~~R_Transcript_90297.p1 ORF type:complete len:710 (+),score=152.44,CLTH|PF10607.5|1.1e-10,CLTH|PF10607.5|3.3e-05 R_Transcript_90297:191-2320(+)
ATGGACTCAACCACCCCTGTGAATTGGGAAGCTCTTGACGCTCTCGTCATCCAATTCGCCAAATCCGAAAACCTTATCGAAGACTCTTCTCCTTCATCTTCACCTTCTTCATCTTCTCTCTCCCCTTCACCTTCATCACCATCACCATCTTCATCGTCATCATCGTCGTCTTATCAATCACGATTGTTGATTCGGCAGATCAGACGGCTGTTGGAGTCCGGTCATATTGAATCTGCTTTGGATCTCCTTCGCCTTCACGCTCCTTCCATTCTCGACGATCACCGCCTTCTTTTCTTCCTCCAGAAACAGAAATTTATCGAGTTGTTGAGGAGAGGAACAACCGAGGATCGTGATTCTGCTATCGATTGTTTGCGTACCGCCCTTGCTCCTTGCGCTCTCGATGCTTATCCGGAAGCATATGAGGAGTTTAAGCATGTCCTTCTTGCCCTAATATATGACAAAGACGACAACAATTCACCTGTTGCCAGTGAGTGGTCAGAAAGAAGAAGGTTTGACATTGCTGGATTGATGTCCTCCATTTTGAGAGCACATCTTCATGCACATGATCCTCTTTTTTCGATGACATTGAGATATTTAATAAGTATACACAAGGAATTCTGCCTTCGTCAAGGCATCTCCTCTCCCATCTCTGATCTGACCGAAAGATTGCTTCTTGAGGACAAAGATCCTCCAGCAACACCTCAAGAGTCACTTTTTGAAGTTCCCCCATTTGATGAGGTTGACATACAAGCCCTTGCACATGCTGTTCAGCTCACAAGACAAGGGGCAGTTGACAGTTTAAGATTTGCAAAGGGAGGCTTATTTCAAGCTTTTCAGAATGAGATATGCCGGATGAGATTGAATATGTCCATTCTAGATGAACTTGTCCGTGAATACTGTGTGTACCGGGGTATAGTTGACCCTGTTACACCATCTTCTGGATCTGGATTGCCGGGGCTAGCTGAGAATTTGAAGGCAAACCGAGCAGACGCTGGTTGTTCATCTGGAAATGGTTCAGTTGACGTTGATTGTGGGAACAGTAAATCTTCAGATGGTGAATCATCCATTAGTAATGCTCATATTGATGGTTCTGAAATCAGTACAGACATGATTCAGTCACGGGATACAGATGTGGAGATGCGTTTTCCCAGTGAGAATGCAATTAATGTTGATGACTGTAGCACCAGTGGAACTCATCAAGCTAAAAGTTTGAGAGTTTGGGAAAGGAACAGAAGTCCTGTAGTTGGAGAAAGGAGAAGACGCAAGAGGTGGAGAGGGCGAAATGATGATTTAGAATATCCAGTTAGTTTACGGTTTGATGGGAGTCGTAGACTAGAGGGTTCTGAAAAGCTTGGCTCTTTAAATCTGATGCATGATAAGGAGGGCAAATGTGAAACTGTTCTGGCCATAAAGGAACTGGCTAGCAGAGGTATGGCGGCTGAGGTTGTTGAAGAAGTAAATTCGTTGGACCCTGTTTTTTTCAAACAGAATTCTGCATTGCTGTTCCAATTGAAGCAGGTTGAGTTCTTTAAGTTGGTGGACTCTGGTGACTATTCTGGTGCTTTGAAGGTTGCATCTTCACATTTGGGGCCTTTGGCAACCACTGATCCAGGCTTACTAAAGCCCTTGAAAGAAACACTAATAACATTACTTAGGCCTACTGACATTGCATTTAAAAGAGACTTGCCTTTGAATGCTCTGGCAAGTTCACTCCAGATTGCGATTGGAAAGAGGCTTAGTATTGAAGAACCCCATCTTATGAAAGTTATGCAAGCAACCCTTCACACACATAATGAATGGTTTAAACTTCAAATGTGCAAGGATCGCTTTGAATCACTTTTGAAGATCGATTCCTTGAAGGAAGTTAATAGCCTGTTGTTGGCTGATACCATTTCTAAATCGAATACAGATGCTAATGCTCATGGATCTTCTCAAGTTACAATGTCCTCCAGTAGTAGAGCGCCAGAGGATGGTAATAGTCCAACTCAAGTGTCCTCGCAGGAAGCTTACGATGAAGGTGCAATACTCAAAGTCATGGAATTCCTTGCAGTCCCTAGGGCTGATGCGATTCATATGTTGGCACAGTGTAATGGAAATGCCGAAACCGTTATCCAACAAATTTTTGCATAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_90297.p1 GENE.R_Transcript_90297~~R_Transcript_90297.p1 ORF type:complete len:710 (+),score=152.44,CLTH|PF10607.5|1.1e-10,CLTH|PF10607.5|3.3e-05 R_Transcript_90297:191-2320(+)
MDSTTPVNWEALDALVIQFAKSENLIEDSSPSSSPSSSSLSPSPSSPSPSSSSSSSSYQSRLLIRQIRRLLESGHIESALDLLRLHAPSILDDHRLLFFLQKQKFIELLRRGTTEDRDSAIDCLRTALAPCALDAYPEAYEEFKHVLLALIYDKDDNNSPVASEWSERRRFDIAGLMSSILRAHLHAHDPLFSMTLRYLISIHKEFCLRQGISSPISDLTERLLLEDKDPPATPQESLFEVPPFDEVDIQALAHAVQLTRQGAVDSLRFAKGGLFQAFQNEICRMRLNMSILDELVREYCVYRGIVDPVTPSSGSGLPGLAENLKANRADAGCSSGNGSVDVDCGNSKSSDGESSISNAHIDGSEISTDMIQSRDTDVEMRFPSENAINVDDCSTSGTHQAKSLRVWERNRSPVVGERRRRKRWRGRNDDLEYPVSLRFDGSRRLEGSEKLGSLNLMHDKEGKCETVLAIKELASRGMAAEVVEEVNSLDPVFFKQNSALLFQLKQVEFFKLVDSGDYSGALKVASSHLGPLATTDPGLLKPLKETLITLLRPTDIAFKRDLPLNALASSLQIAIGKRLSIEEPHLMKVMQATLHTHNEWFKLQMCKDRFESLLKIDSLKEVNSLLLADTISKSNTDANAHGSSQVTMSSSSRAPEDGNSPTQVSSQEAYDEGAILKVMEFLAVPRADAIHMLAQCNGNAETVIQQIFA*

Click here to download the sequence:
Link to NCBI Protein BLAST