Annotated TAIR ID | AT4G27010.2 |
Annotated Gene Name | INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Ribosome 60S biogenesis N-terminal (InterPro:IPR021714); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G72270.1); Has 312 Blast hits to 226 proteins in 103 species: Archae - 0; Bacteria - 2; Metazoa - 129; Fungi - 90; Plants - 83; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). |
Annotated Gene Symbol(s) | |
Annotation Type | Ortholog |
Chromosome Position | chr4:13558943-13568296 | Forward length=2402 |
E-Value | 0 |
Replicate 1 | 2.2042623324365 |
Replicate 2 | 1.5757223550517 |
Replicate 3 | 1.7889071265567 |
Replicate 1 | 2.0334927841903 |
Replicate 2 | 1.7207230978741 |
Replicate 3 | 2.565427634348 |
Replicate 1 | 2.9823284817703 |
Replicate 2 | 2.6382290634824 |
Replicate 3 | 3.0184187034883 |
>R_Transcript_90487.p1 GENE.R_Transcript_90487~~R_Transcript_90487.p1 ORF type:complete len:2625 (+),score=495.59,Npa1|PF11707.4|1.3e-63,Npa1|PF11707.4|5.6e+03,NopRA1|PF16201.1|4.8e-48,NopRA1|PF16201.1|6.8e+03 R_Transcript_90487:53-7876(+)
ATGGAGGAACCATTGTCCGACGTCGAAGAACCCATCGAAACCTTAGAAAATCAAACTGGGAACAATTTCGAAGATATTCAATCTCAAAACCCTCTCTCTGACATCGAAGACGATGACGAACAAGAAATCGAAAATGTCGAAAAAATCCCTAATTTCGACCCAAAACCCTTACACGAAGCTAAAATACGTGAATTACTACGGAACATTAGTTCAATTGAAGTAAAACTATGTGTTGATGGGTGTAAGGAGTTCAAGAAGCTTCTTAGGGGAAGTTTTGGTGGTGAATTGCTTTACGAGTATGTTAGGACTTCGTCGAAATTCACTGAGCTTATGGAGGTTTGGAATCGTAGGCGAGGCAAGACCGGTTTGTGTTATATAATGTCGTTGATTTCTGTGATTTTGAGCCATTCTGAGGGGAGATATAGGCCTAATGATCCTGGTAGGGTAGCGATTAGTCGTGTTTTGGATAAGTTTGCGAGGTCGATTGTTGAGGAGAGGTTGGAGGATGTTTATAAGGAGATTAATAGTAAGGAAGGGAAGCGGCAGAAGGGGGCATTGTTGTTGATGGCTTCGGTTGTGAGTCGTGGTTCGTTGTTGGCTGCTGAGGTGGCGAAGAGTTTTGATTTTAAGCTTCCTGTGTTACCTAAGTTGGCAGAGTATAGTAGGAGGAAGGTGGAGAGAAGGAGGAAGGATTCAACTAGGGAAGCTTTTGTCGAGTTTGCTATGTCGTTCTTGGAGGTGGGGAAACCGGCATTGTTGAAGTGGGTCTTGCAACAGAGGGAAATTTTTTCGGGCATTCTTAGGGGGCTTGGGAAGGATGGCGATGAGTTGGTGGTTTTCGTGTTGTCAACGTTGCGTGATAGGGTTCTAGTTCCTGAGTCTATGGTACCCCCTGGTCTTCGGAGTGTTCTTTTTGGGAGTGTCACATTGGAACAGTTGGCTGATATTTCTGCACGTGAGGGCGGTGGCCCTGGTGCTGAGCTCGGGTACCAGGTTCTCCTTATGGTCTGCACTGATCCTTCCAATGGGTTGATGCCTGACTTGGGTAGGAAACCGACTCCACTCAAGGGAAATCTCAAGCGGCTTGGGGGTTTGATGAAGAAGCTTAAGGCATCGGAGATTGAGTATCACAGAAACCTGCTTCTGGCAATTGTCAATGGGAGACCGGCTCTTGCTTCATCTTATCTAGATGAATTTCCTTACAACCTTGAGGATAACACATCAGCTTCCTGGATTTCCGCAGTCACATTGGGGGCAAATGTGGTTAGGTCAGTGAGCATTGGGATTTCTTGGGATTTTCTTAAGCTCCACGATGATCAAGCACTGGCCTTTGATAGTCCAGAAGTGCAGAGTGTTTTTAAATGTGTGTGTCCTCGTCCATTCAGCCGTGTTATAGTCAACAAAGGGTTACTTCACTCAGATCATTTGATCAAGCATGGCACATTAAGGTTCCTGTTGGAGATTCTGAAACTCCTGAACTCCTTCATTGATGCTTTAAGTGTGAACAGATTGTCTTCCCTCAAGCAAAAAGTCCAGGATGAAATTCGGATTCTGCTTCCTGACTCCCAAGTGTTGTTTACATTACTGAGTTCAGTTAGTAGTATGTACCAGCAGTCTAGACCTTCTCTGAAGAGAGCAGCCCATTCAGAAAAAATTTGCCAAAATAAATCTACTATTAACAAGAAATTGAAGACTGAGGTCATAAATGAGGAAGTCGATATTGTTGTGGGTGGGTTAAATTCTGCTTCTGAAGATAATTTGCCTGAAGATGGTGAAAAACCAAGCAAAGCAGTTTCTATGTTTCAATCCGATGATGATAATGAAAATGAAAATGATGATGAAAAACTCATTGAGATTTGGGCTTCCTGTGAAGACTCTTCTGCTTCAGATGTTGCAAAAAATGCTGATGTGTACTTCTATTGCAAACTGCTTGAAGCTCTCAAGATATTTCATGGGACCTTGCGTGCTGTCTTGGGAGCATCATATGATTTTCTCAAAATTCTTCCAAGTAATCCACTTGAGTTGCCAAGTATTCTGCTGCAGTCTTTGCTGCCCATGTTGATAGAATACCTTGGCTGTTCACAAGATTTATTTTCTGTTATGCTGCCTCCTATCTACAAGCATTTGCAGTCCTTCCTCATTTTGTTGATACATTCATCAGTCAGAGACATAAAAGAGCAAGCATATGTGTTAGCGGAAGCAGCAATAAGGAGTACTGGTGCATTTGATCACAATCCTTGGGAAATTGGGGCATGGTTCTTGTATTTACCAGGGTTTGTTGGGCATGGTATTTGTAGAGAAGACCAAGAGATTGAATTTTTCCAGAGCTTGTCTTCACCAGTTATGTCGTTCCTCTGTGACGCTGTATCCACTGTTGGAAATAATTTGTTTAAGTACTGTGCTCTTCTGAAGTGTAGCATTTCCAATCTAGAAGTTGTCAAAGAGAAAAACGTTGATTTCAGCCCACTTGTAATCTGTATGCTGGAGAAATGTCTACGGCTGCTTAGTTCTGGGTCCGGAACATTCACCTTGCCTGAGAAATCGATGATATCCTTGTATGTGTGTAACACTTTGAAATATCTTTTGCAAACTCAGGTTGAAGCTGGAATATTAGCTACTGTTATCCACCAATTATTATCAGAGAAGATTGAGGACCTTATCTGTGCAGTTGCCGATGCTCAAAGTGACTTTTGTGAATGGAGACCATTAGTCTCTTTGTTTCATTTTACAGGGAGCATATTGTGTCAAGAAACATGCAATGCTTGCTCCATTGATAGAGTTTCTCTTGGTACAAGCAGTTCTTTTTTTCAAACAATTTCTGAGGTGAAAAGTCTATTGACTGCAGGCTGCACTGAGGTAGTTGGAATATCTAAAGCATTATATTTCACAGCAATATGTGCAAGCGCTGATGACATGTTAGAAAATCTACCATCACTTATGAGTGTTTCAGGGAAACTCCCTGGGTTTCATCAGTCTTTCATGAACTATCTGTTTCATGATCAAAACCTCATGAACTATGTATCTAAGTTATGGCCTGACATGTTATCTTCTGGGCTTGCTCTCAGTGTTGTAGCATCTGCTCAATCAAGCCGTGATATTGACAATCAAACTTCAGCGAAGACTCGGTGTATAGATTTTGAGTCTGCAGAATATGCGTCTGCAGTATTTAGTTCTTTCTTGAATGAGGTACCATTTTATATGTTATTTCCTGCAATTATCGTCTGTGGCCAGCAACATTACTCGAAAATGAAAGAGCTGCTTGAAGATAAGCTATTGAACTTGACAAATGAGCAAATTGTTTCTTCACTTAGGCTAGTGCTTTTTTGGTTTCATCAGATTCAATGTTCCTATAAAAAGAAGCCATCTGAACAGCAGGAACACCTTTCTGAAATATGTTATATACTTGTGGAACGTATTTTGGCTCGTTTGTCGATGCTCAAAGTTAATATCGGATTTGAAAGAGCTGCAGGAATCCCTCTGTCTATTTGTGTTCAAGAAGTTACTAAAACAATCTTTTGTCACCCTGCAATAGCTGCAGCAATGTCATGCTCTCTTGGTCGTGATTATGAACTTGGTGAAGAATTACTGTGGGATGGTTCAGAGGGGCTTATACGTCTCTGTGTAGAAAGAATTAGTAAAATAGATCTGCATGTTTTGAAGTTATTAACTGTTACATCTGATTCTTTATTAGCTCTTTTTGATGGGGAAAATGCATATACCAACAGGGATAGTATTTTGACGACATTTAGGGATTTGATGCAGTGCATAATTATGAAATTTAAGGCAGATTTTAAGCTTTGGTGCATATCCTGGAATACAGCCTTCCTGCCGGTCTTATATGCTGTTCTTTCTTTGATGCGCTTTATTTCACCCATTGAGCTGCTTGAATTGGCAAACTGGATGTTGGCTGGAGTAGAATTTTCTGATTCCAAGCTTTCGAGAACCTCTTCCAGTGTTTTTCCTGCATCACTGGGGTATTATATTGCTTCTGCAGCTTTTGATATGTTATCTAAATTTTTGCAACCTCAAGATATGAAATCAATGGCAAGTGGTTATTTATGGGTTATTAGAAAAGAGAGTTTTGATGCCAACTTGTTTGAAAGGATATATTTGAAGGCTTATGAATCTGCAAGTAGTTTGGAACTTGACTCTGCAGATATATGCATGCTTAAAGCTCTCAGGGCAGCCCACAACCTAACATCTTGGCAAGAGCTACTCCCAATAAGTATGGAAATGACAAGGATAATCGCCAACACTCCTATCAAAATACTCTCACATTGTATTCATAGGACTAACAGTACTAAGGCAAAGTTATTGTATCTGATGATTGAGATCAGTCCATCACATTTGTCAGTTTTTGGTCACTTGTTCTTTGATATTTTGAGCAAAGACTTTTCTCCTAGGGTAAATCTAGCTGCAGATGTTGATAATCAATCTCTTTCTGATGAAGAATATTTGATGCTTATGCCAGCTGCAGTCTCATACTTAAATACTTCCAGAAGAAAAAGTGGTCTCATACATGATTTCAGAAAGCAGTCCTTCAGCAATCTTGATTATGTGTCTTCTTTCTATTCAAGGATTCTCTTGGATGGTTTCTTTAATTGGAAGTACTTAGTGTGTCGAACTCCATTTCAGGTGGAGTGTGATAAAATTGAGCCTTGCTCTGTTGAGAATCTTCATGAGACCTTCACTAATAGTCTCCTTGGAAAAGCAGTTAATATGATAAGGTGGTACTTCGCCACAAATGGGGATTATATGGACAAGCGCTTGAAGTTATTTTGCTCAATATGCCCTTCTTCTGGTTCACTGGATGATTTTTTGGACTTTAATCTAGGAGACATTGATTCTTGTTCATTTGAACAACTACTGAACTTAACGAACAGAGTTGTTGCTAAACTTTCTCTTTCTTTGGTGCTGTTATTTCCTGGTTGTAGCGAGAATCATCCATCAAATGGAACACATGATGAAGATGCTGAATCTGCTGAGGGGTTATATGATGAAGACTCTTTAAGAATGAGATTTTTAGATATGTTGGTTTCTTGCTGGCAACTTGTTGTGAAGAAATTCCCATCTGCCTCTGACTTTTCTGGAGAGAAGAGTGACATCTTTTTGTTGTTGAGATCTCTAGAAGTGTTTGTACTGAGATGTATATATAAATTGACAAAGGAGATGCATAATTACTTTATTCAGAAGGATTCACTTCCCTTTCTGGAAAAGATGGCAAAGATTTCTCTTCTTCATAGATTTGGTGATCCTATCACATTGCAAACTCTTCGGCATATTTTCTCATCTTTGTCGGATGGGAATTTGCCTATTCTTTTATTTCTTCAGCTTCTTCTTGGGCATTCAAAGTTGCCCCCAACTATTGCTTCCATTGTTGAGTCATCTACGTCTACTGTAGTTGGGATGACTGTGAAGCCCATATCTAGCTTTTTGAGGTCATTAAATATCCCTTCTGAAAGGAGACACTCAGAAACATGTAATAGATACAAGGGACAGCTGGAGGTCATTAAGTTGCTCCGACTATTGTTTCATTTAAGTTCTTACCAGCAAAGTTCATTTTCTGAAGATGATTTTGGCGTAAATTTGAGAGAATTACTTATGTTGCTTTTGCCTTCTTATGGTGCCACACTTAGAGAAATGGATATGGAGATATATGGTCTTGTTTCCGAAATTGAGTCTGCTATAGGAGCAGAACAGAAAATAGTTGCTGAGCTAGATTACCTGTGGGGAAGTGCCGCTCAGAGAGTTGGAAAAGAGCATCTAATGGAGCTTGATTTGCTGAATAATGATGTGGAAGATGCAGAAGAGGATCGCAGACGAAGTCGGTTCAGGGATAATCTTCCAATTGACCCCAAGTTATTGATCGCGACAATCCTATATTTTCCATATGGAAGGACTATATCTAAAACTTCTTTGCTCTTGGATAGCTCAAATGAAGATAATGTCAGCAATATGGTGGAGGGTCACTTCACAGAACTTGGGAGCTTAGACCTGTATGATCCAGTTTTTGTTTTGTCCTTCTCCATTCATGCCTTGTCAATGGGTTACTTGGATCCTGTGGAGTTCACTGGTGTGGGCTTGCTTGCTGTTGCATTAGTTAGCATAGCATCACCTGAAGAAGGCATAAGAAAGTTGGGTTATGAGGTTCTTAGCAGATTCAATAGTGCATTGAAGGGATGTCAAAAGAAGAGGGAAGTGACCAGAATTAAGCTGTTGTTGACGTATTTACAGAATGGAATAGAAGAAGTATGGCAAAAAATTCCCACCATTACTGCTGTTTTCATTGCAGAGGCTTCTGTCATATTGCTGGATCCTTCCCATGATCAGTATTCAGCCATTAGTAAGCTCCTGATGCAGTCTCCACGGATGAATTTGAAGTCCATACCTTTGTTCCATGATGTTGTCTGGAGTAGCTCTGTGAACTTCAGAACAGACAGACTTTGGGTGCTTCGACTTCTATATGCAGGGTTTAATTCAGAAGATGATGCTCAAATATATATCAGGAATTCAGTTCCTGAGATTTTATTGAGTGTTTATGCTTCTCCTCTTTCGGATATTGAGGCAAAGGAGTTGATTCTTCAGGTGGTGAAGAATTGTGTTAAAGTGCAGAAGATGGCACGTTATCTCATTGAGAACTGTTGTCTTATTTCTTGGTTATCTTCAGTTCTTTCCTTGTCTTTGAGTCTCACTGATGATGCAGATGGACTTTTCTCGAAACAGTTGGTCCTGTTACTGGAGGTGATCCAGCATATCATTTCATGTATAAGTACTACAGAATGGTTGCAGAAGTTTGCGCTAGAGCAGCTTTCGGATCTCTCATGCCACCTTTTCAGTCTTTTAGTTAGAAGCTCAAAGCTTGTTCAGAAGAATGTGGCCATGGTCGCTTTGATACTAGAAGTAATTGTATCAGCTTTGAAGATATCACAGGAAAGAAAAATATACCAACCACATCTTACGTTGTCAATGCGGAGTTTATATCAACTATATCAAACTGTTGAGCTTTGTGGTAGAGAAAAACCTAGTCAGTGTGCAGAGGTTGGGTTGAAGGCTATTCTTATGAGTGTACCTGCAACAGCGATTTCTGACTTGAATCAAGAAGAGCTCTCGCAGTTTCTCATGTGGGCAGTTTCTACAGCTGTGCAATCAGATTTTATGCTGGAGTTGCAGCAGAAAGACTTCTCTTCAAACACTGAAACTTGCAATCAGGAACACGGACAAGGCTCTCCTATTTTAACACTTCTAAGATGGATTGTAGCGTCAGTGATTCTTTGGGCAGTTTCATGCTGCCGTGATGACTCTGACCCGAGATTTCTCTTGAGGGAAGCAAATCGAGCAAGTTTGTTGTCATTAATGAGACACACGGACTACAGATGTGAAGAATCAAAACTCTCATCTGGTTGTAAAGAAATTTTAGCTGTAACTATCTTTCATCTGCAACAGCTTCTTGGCATGAGGTGCACGGTGCTGCCTTCAGTTGTTGCAGCACTCTCTATCTTACTTCTTTCTGATGGTTCATGTACTGCAGGCTCTGTCACCACTGGTAGCTCGGAAAGTTCTGTATCCTCACTCTGGTCCAAGATTTGCTACCCTCCTGAAGCCAATCCTGCCTGGCAATGGTCAACTCACCAACCATGGGCTGACCATACAATGAAACGTACTGCTATGGAGAAATTAATTGAACTTCATGCATGTCAAAAACTTCTGGCGATTATCTCAGGATTTCTGACAAATAAACCATCTGATTATCATTTACTATCACCTCTAGAATTAGAGTCTTCAGGTTTATTTGAATGGGAAAGAACCAACCTTCTAAAGGAATGA
Click here to download the sequence:
Link to NCBI Nucleotide BLAST
>R_Transcript_90487.p1 GENE.R_Transcript_90487~~R_Transcript_90487.p1 ORF type:complete len:2625 (+),score=495.59,Npa1|PF11707.4|1.3e-63,Npa1|PF11707.4|5.6e+03,NopRA1|PF16201.1|4.8e-48,NopRA1|PF16201.1|6.8e+03 R_Transcript_90487:53-7876(+)
MEEPLSDVEEPIETLENQTGNNFEDIQSQNPLSDIEDDDEQEIENVEKIPNFDPKPLHEAKIRELLRNISSIEVKLCVDGCKEFKKLLRGSFGGELLYEYVRTSSKFTELMEVWNRRRGKTGLCYIMSLISVILSHSEGRYRPNDPGRVAISRVLDKFARSIVEERLEDVYKEINSKEGKRQKGALLLMASVVSRGSLLAAEVAKSFDFKLPVLPKLAEYSRRKVERRRKDSTREAFVEFAMSFLEVGKPALLKWVLQQREIFSGILRGLGKDGDELVVFVLSTLRDRVLVPESMVPPGLRSVLFGSVTLEQLADISAREGGGPGAELGYQVLLMVCTDPSNGLMPDLGRKPTPLKGNLKRLGGLMKKLKASEIEYHRNLLLAIVNGRPALASSYLDEFPYNLEDNTSASWISAVTLGANVVRSVSIGISWDFLKLHDDQALAFDSPEVQSVFKCVCPRPFSRVIVNKGLLHSDHLIKHGTLRFLLEILKLLNSFIDALSVNRLSSLKQKVQDEIRILLPDSQVLFTLLSSVSSMYQQSRPSLKRAAHSEKICQNKSTINKKLKTEVINEEVDIVVGGLNSASEDNLPEDGEKPSKAVSMFQSDDDNENENDDEKLIEIWASCEDSSASDVAKNADVYFYCKLLEALKIFHGTLRAVLGASYDFLKILPSNPLELPSILLQSLLPMLIEYLGCSQDLFSVMLPPIYKHLQSFLILLIHSSVRDIKEQAYVLAEAAIRSTGAFDHNPWEIGAWFLYLPGFVGHGICREDQEIEFFQSLSSPVMSFLCDAVSTVGNNLFKYCALLKCSISNLEVVKEKNVDFSPLVICMLEKCLRLLSSGSGTFTLPEKSMISLYVCNTLKYLLQTQVEAGILATVIHQLLSEKIEDLICAVADAQSDFCEWRPLVSLFHFTGSILCQETCNACSIDRVSLGTSSSFFQTISEVKSLLTAGCTEVVGISKALYFTAICASADDMLENLPSLMSVSGKLPGFHQSFMNYLFHDQNLMNYVSKLWPDMLSSGLALSVVASAQSSRDIDNQTSAKTRCIDFESAEYASAVFSSFLNEVPFYMLFPAIIVCGQQHYSKMKELLEDKLLNLTNEQIVSSLRLVLFWFHQIQCSYKKKPSEQQEHLSEICYILVERILARLSMLKVNIGFERAAGIPLSICVQEVTKTIFCHPAIAAAMSCSLGRDYELGEELLWDGSEGLIRLCVERISKIDLHVLKLLTVTSDSLLALFDGENAYTNRDSILTTFRDLMQCIIMKFKADFKLWCISWNTAFLPVLYAVLSLMRFISPIELLELANWMLAGVEFSDSKLSRTSSSVFPASLGYYIASAAFDMLSKFLQPQDMKSMASGYLWVIRKESFDANLFERIYLKAYESASSLELDSADICMLKALRAAHNLTSWQELLPISMEMTRIIANTPIKILSHCIHRTNSTKAKLLYLMIEISPSHLSVFGHLFFDILSKDFSPRVNLAADVDNQSLSDEEYLMLMPAAVSYLNTSRRKSGLIHDFRKQSFSNLDYVSSFYSRILLDGFFNWKYLVCRTPFQVECDKIEPCSVENLHETFTNSLLGKAVNMIRWYFATNGDYMDKRLKLFCSICPSSGSLDDFLDFNLGDIDSCSFEQLLNLTNRVVAKLSLSLVLLFPGCSENHPSNGTHDEDAESAEGLYDEDSLRMRFLDMLVSCWQLVVKKFPSASDFSGEKSDIFLLLRSLEVFVLRCIYKLTKEMHNYFIQKDSLPFLEKMAKISLLHRFGDPITLQTLRHIFSSLSDGNLPILLFLQLLLGHSKLPPTIASIVESSTSTVVGMTVKPISSFLRSLNIPSERRHSETCNRYKGQLEVIKLLRLLFHLSSYQQSSFSEDDFGVNLRELLMLLLPSYGATLREMDMEIYGLVSEIESAIGAEQKIVAELDYLWGSAAQRVGKEHLMELDLLNNDVEDAEEDRRRSRFRDNLPIDPKLLIATILYFPYGRTISKTSLLLDSSNEDNVSNMVEGHFTELGSLDLYDPVFVLSFSIHALSMGYLDPVEFTGVGLLAVALVSIASPEEGIRKLGYEVLSRFNSALKGCQKKREVTRIKLLLTYLQNGIEEVWQKIPTITAVFIAEASVILLDPSHDQYSAISKLLMQSPRMNLKSIPLFHDVVWSSSVNFRTDRLWVLRLLYAGFNSEDDAQIYIRNSVPEILLSVYASPLSDIEAKELILQVVKNCVKVQKMARYLIENCCLISWLSSVLSLSLSLTDDADGLFSKQLVLLLEVIQHIISCISTTEWLQKFALEQLSDLSCHLFSLLVRSSKLVQKNVAMVALILEVIVSALKISQERKIYQPHLTLSMRSLYQLYQTVELCGREKPSQCAEVGLKAILMSVPATAISDLNQEELSQFLMWAVSTAVQSDFMLELQQKDFSSNTETCNQEHGQGSPILTLLRWIVASVILWAVSCCRDDSDPRFLLREANRASLLSLMRHTDYRCEESKLSSGCKEILAVTIFHLQQLLGMRCTVLPSVVAALSILLLSDGSCTAGSVTTGSSESSVSSLWSKICYPPEANPAWQWSTHQPWADHTMKRTAMEKLIELHACQKLLAIISGFLTNKPSDYHLLSPLELESSGLFEWERTNLLKE*
Click here to download the sequence:
Link to NCBI Protein BLAST