Transcript Information: R_Transcript_90574.p1


Annotated TAIR IDAT5G36170.1
Annotated Gene Namehigh chlorophyll fluorescent 109
Annotated Gene Symbol(s)HCF109, ATPRFB
Annotation TypeOrtholog
Chromosome Positionchr5:14236083-14237974 | Reverse length=456
E-Value8.5E-226
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 110.356571324308
Replicate 27.0748403576657
Replicate 36.9716157901333
Condition 2: 8 Hour
Replicate 19.1023541434325
Replicate 29.5762907015512
Replicate 39.7860857257738
Condition 3: 24 Hour
Replicate 17.286608380967
Replicate 26.3289003772961
Replicate 37.9937704073886


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_90574.p1 GENE.R_Transcript_90574~~R_Transcript_90574.p1 ORF type:complete len:460 (+),score=106.41,PCRF|PF03462.14|1.1e+04,PCRF|PF03462.14|1.4e-54,PCRF|PF03462.14|7.9e+02,RF-1|PF00472.16|1.4e+03,RF-1|PF00472.16|1.2e-35 R_Transcript_90574:93-1472(+)
ATGGAGGGAACTACACGAATAGTCTACCCAAATTCCTTACTTCCTATCTCCAACAAAACACCCTTGTTTTCCTTTAATTCCCAAAATCTTCGTTTCTCTAATCACTTTCTCTCTTTTCCCAAGTTCAATTCTTTTTCCTCCTATCTCTTAATAACCCCATCTCGTTTCCCTTCTTCTCCTGCTCAATTTGCAACCCCAGATAGTCAAGTGAGTGCTGAGGTCAGCACTGAAACTAGGGAGTGGGCCATCCAAGATTTTTATACACTAAGAAAGGATGTTGAAAACACCAGTAAGCGCGTAGAAGAGATTGTAGTCTCTGCTGGATTGCAACATCTAGAGGAAGAGCTTGCAACTTTGGAGTCTAAAGCAGCTGACAGCAATTTGTGGGATGACCGTGCTAAGGCACAAGAAATTCTTTCAGCTTTGACTGGTGTCAAAGACAAAATAAAACTTCTCAAAGATTTCCAAAACCAGGTGGAAGAGGCTGAAACAATAGTTAATCTCACTGAAGAGATGGATTCTATTGATACTGCGCTTCTTCAAGAGGCTGCCGGCATTATTAAGGAATTAAACAAAGCTCTTGGTCGTTTCGAATTGACACAGCTACTTTCTGGTCCATATGATAAAGAGGGGGCTGTTATCACTATCTCAGCTGGTGCTGGTGGCACTGATGCTCAGGATTGGGCTGACATGCTTCTCAGGATGTATATGAGATGGGCAGAAAAGCAAAAATATAAGGCTAAAGTGGTTGACAAATCACCAGGAGAGGAAGCAGGTATTAAATCGGCAACAGTTGAGGTTGAAGGCCGTTATGCTTATGGTTATCTTTCCGGAGAGAAAGGGACTCACCGAATTGTGAGGCAATCACCTTTTAATGCCAAGGGTCTTCGTCAGACAAGTTTTTCCGGTGTTGAAGTCATGCCTCTTCTTCCCGAAGATTCTATGAATGTTGAAATACCTGAAGAAGATCTGGAAATAAGTTTCTCGAGGGCAGGTGGAAGTGGTGGTCAGAATGTAAACAAGGTAGAAACAGCTGTCAGAATCACTCACATTCCCACTGGGGTAACAGTCCGATGCACAGAGGAGAGAAGCCAGATGCAAAACAAGGTCAAGGCCCTAAATCGATTGAAGGCCAAACTTTTGGTCATTGCTGAAGAGCAAAGGGCATCAGAGATCAAGCAGATCAGGGGAGATGCTGTGAAGGCCGAATGGGGTCAGCAAATAAGGAATTATGTATTCCACCCTTACAAGCTCGTGAAAGATGTACGGAGTGGATATGAAACTTCAGACATTGCTTCTGTAATGGATGGTGAATTAGATCCCTTCATTAAATCTTATCTGAAGCATAAATATAGCCAGATGTTATCGACAAGTACTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_90574.p1 GENE.R_Transcript_90574~~R_Transcript_90574.p1 ORF type:complete len:460 (+),score=106.41,PCRF|PF03462.14|1.1e+04,PCRF|PF03462.14|1.4e-54,PCRF|PF03462.14|7.9e+02,RF-1|PF00472.16|1.4e+03,RF-1|PF00472.16|1.2e-35 R_Transcript_90574:93-1472(+)
MEGTTRIVYPNSLLPISNKTPLFSFNSQNLRFSNHFLSFPKFNSFSSYLLITPSRFPSSPAQFATPDSQVSAEVSTETREWAIQDFYTLRKDVENTSKRVEEIVVSAGLQHLEEELATLESKAADSNLWDDRAKAQEILSALTGVKDKIKLLKDFQNQVEEAETIVNLTEEMDSIDTALLQEAAGIIKELNKALGRFELTQLLSGPYDKEGAVITISAGAGGTDAQDWADMLLRMYMRWAEKQKYKAKVVDKSPGEEAGIKSATVEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQTSFSGVEVMPLLPEDSMNVEIPEEDLEISFSRAGGSGGQNVNKVETAVRITHIPTGVTVRCTEERSQMQNKVKALNRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRSGYETSDIASVMDGELDPFIKSYLKHKYSQMLSTST*

Click here to download the sequence:
Link to NCBI Protein BLAST