Transcript Information: R_Transcript_90650.p1


Annotated TAIR IDAT5G06870.1
Annotated Gene Namepolygalacturonase inhibiting protein 2
Annotated Gene Symbol(s)PGIP2, ATPGIP2
Annotation TypeHomolog
Chromosome Positionchr5:2133941-2135016 | Forward length=330
E-Value2E-26
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 16.1824545169209
Replicate 25.8417126158249
Replicate 33.7870009735575
Condition 2: 8 Hour
Replicate 13.4556664240064
Replicate 21.7131320765424
Replicate 31.7566074793923
Condition 3: 24 Hour
Replicate 14.6285901668758
Replicate 23.6462323165874
Replicate 32.4711924646497


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_90650.p1 GENE.R_Transcript_90650~~R_Transcript_90650.p1 ORF type:complete len:248 (+),score=23.41,LRR_8|PF13855.2|1.3e-06,LRR_8|PF13855.2|0.00037,LRR_8|PF13855.2|2.6e+02,LRR_4|PF12799.3|4.5,LRR_4|PF12799.3|0.00012,LRR_4|PF12799.3|0.13,LRR_4|PF12799.3|1.5e+03,LRR_1|PF00560.29|1.1e+04,LRR_1|PF00560.29|1.6e+04,LRR_1|PF00560.29|5.9,LRR_1|PF00560.29|0.062,LRR_1|PF00560.29|31,LRR_1|PF00560.29|1.4,LRR_1|PF00560.29|1.6e+04,LRRNT_2|PF08263.8|4.1e-09 R_Transcript_90650:104-847(+)
ATGTTGAGCCCTCCAATGATTCTCATCTCATTCATTCTCTATTCAAACTTCTTCCACTCCTCCCTAGCCGACATACCAGGTTGTGACCCAAACGATCAGGCCGTACTCCTTCAAATCAAGGCCAAAATCAAGAGCCCCAATCCGGGTATTGGGGACCTCTCGGACTGGGATCCCAACACAGACTGTTGTTACTGGGATTTCATCGGTTGCAACAGTGCCCCCGGCCCGAGTTACGGCCGTGTCAACGGGGTCACCATCTCCAGAGGCAGTGGCCTCGTAGGGCAGATTCCCGAGGAGCTTGGGAACCTGCCCTACTTAACGGAGATCATGTTCATGGATGAGCCCAAGCTCACGGGTCCCCTCCCTAGCTCCTTAAGCAAGCTCAAGCGGCTCCAAGTCATCTACTTGGGCTCCAACAGCTTATCAGGCTCTGTGCCTGCTTATCTTGGCAAGCTTACCAAACTCAGAGAAATCGATATCTCCGGTAATCACTTCACTGGCACCCTCCCAGCCTCGCTCTCGAGGCTCGGGAGGCTTACCAGCTTCAATGTGTCTCATAATATGCTCACTGGCTCCATACCAAGCTTGAAAACAACCAAGTTGAAGAGTTTTGATGTTAGCTACAACCAGCTTTGTGGGGCTATTCCTTCTGGGTTGGACAAGTTTAGTAAGGCTTATTTTTCCCACAATAAGTGTCTTTGTGGTCCTCCTCTACCACCTTGCAACAAGTTGCAAGTCAAGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_90650.p1 GENE.R_Transcript_90650~~R_Transcript_90650.p1 ORF type:complete len:248 (+),score=23.41,LRR_8|PF13855.2|1.3e-06,LRR_8|PF13855.2|0.00037,LRR_8|PF13855.2|2.6e+02,LRR_4|PF12799.3|4.5,LRR_4|PF12799.3|0.00012,LRR_4|PF12799.3|0.13,LRR_4|PF12799.3|1.5e+03,LRR_1|PF00560.29|1.1e+04,LRR_1|PF00560.29|1.6e+04,LRR_1|PF00560.29|5.9,LRR_1|PF00560.29|0.062,LRR_1|PF00560.29|31,LRR_1|PF00560.29|1.4,LRR_1|PF00560.29|1.6e+04,LRRNT_2|PF08263.8|4.1e-09 R_Transcript_90650:104-847(+)
MLSPPMILISFILYSNFFHSSLADIPGCDPNDQAVLLQIKAKIKSPNPGIGDLSDWDPNTDCCYWDFIGCNSAPGPSYGRVNGVTISRGSGLVGQIPEELGNLPYLTEIMFMDEPKLTGPLPSSLSKLKRLQVIYLGSNSLSGSVPAYLGKLTKLREIDISGNHFTGTLPASLSRLGRLTSFNVSHNMLTGSIPSLKTTKLKSFDVSYNQLCGAIPSGLDKFSKAYFSHNKCLCGPPLPPCNKLQVK*

Click here to download the sequence:
Link to NCBI Protein BLAST