Transcript Information: R_Transcript_91513.p1


Annotated TAIR IDATMG00300.1
Annotated Gene NameGag-Pol-related retrotransposon family protein
Annotated Gene Symbol(s)ORF145A
Annotation TypeHomolog
Chromosome PositionchrM:89617-90054 | Reverse length=145
E-Value3E-12
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 15.7384974937571
Replicate 23.6920670359032
Replicate 34.8010569029236
Condition 2: 8 Hour
Replicate 13.0879154729208
Replicate 24.4880633180355
Replicate 35.9000794734117
Condition 3: 24 Hour
Replicate 15.0564264586773
Replicate 24.30919800704
Replicate 35.75378382533


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_91513.p1 GENE.R_Transcript_91513~~R_Transcript_91513.p1 ORF type:3prime_partial len:563 (+),score=92.12,UBN2_2|PF14227.2|7.1e-35,UBN2|PF14223.2|5.8e-22,gag_pre-integrs|PF13976.2|7e-13,UBN2_3|PF14244.2|1.3e-08 R_Transcript_91513:143-1828(+)
ATGGAGGGTACCGTCACTCATGATGGTGAAATGTTCAAGCTTACCGCCGATAATTATTCATATTGGAAGCCTATGATGGAGGATCATCTCTATTGTAAAGATCTATATGAGCCTATTTCAAACGAGACGATGCCGAAAGGAAAAGATGCTAAAGATTGGGAGCTCTTGAATCGGAAGGCGGTTGCCATGATTCGTAAGTACATCGATCGAAGCTTATTCGAACATGTATCAACTTACACAAATGCTTATGAGCTATGGAAGAAGCTTGAGTCAATGATACAAAAGAAGACACCCCGAAACAAGGCTCATCTTGCTAGAAGATTGGTAAAGCTGGAGTACAATGATGGCCAAAGTATGATTGAGCATTTAAACAACTTCAAAGGTCTTGTCAATCAACTCACAAAGATCGAGATGAAGATTGATGATGAATTGCAAGCATTGTTACTCCTTAGTTCGTTACCCGAGAGTTGGGATACTCTTGTTGTTACCTTGAGTAACTCAGCTCCCGAAGGAAAGCTCTCCATGGATGGCGTCACCGACAGCCTATTGAATGAAGAGTCAAGGAGAAAAGAGCGTGGAATCTCTGGTCGATCAGAGGCCAATGTCATCGAGAATCGAGGAAGAAGCGAGACTCGAGGAAGGAATAACACTAGGGGTCATGACAGGTCAAGGGGTCGGTCTAAGTCACGATCAAAGATCACATGTTATTATTGTGGCAAGCCTGGCCACAAGAAATCTGAATGTCGAAGTTACAAGAGAGATCAAAAGAATGGAGCCGTCAAGCCCGACACCATAGACCCCAAGAAGAAAGAAGATAAGAGCACAACAGCCGTGGCAACAAATGATGTAGATGATGTTTTTCTCATTGGTGAAGACAATTATCTCAACATCGCAGACAATGATTGCTCATGGATTGTTGATTCGGGTGCTTCTTTCCATGTCACCCCACATCAAGAGTTCTTTTCATCGTACCAAGTTGGTGATTTCGGTACCGTGAAGATGGGAAATCAAGTTTCAAGCAAGATCGTGGGGATAGGTACTGTCAATCTTATAACCAATACAGGATGTGAACTGTTGTTGAAGGATGTGAGACATGTTCCAGACATGCGTCTCAACCTCATCTCAGCTGGGAAGCTAGATGATGCTGGGTATATGAATAGCTTCGGTGCAGGAAAATGGAAACTCACAAGAAGTAGCATTATTGTGGCTCGGGGAAGAAAAGAAGGCTCGTTGTATGTTACACAAGCCAAGCTATGCAAGGGGGAGACTAATGTTGCTCATGATAATTCGTGCTTGGAGATATGGCACAAGAGATTGGGACATATGAGTGGGAAGGGTTTGCAGGTCCTTACTCGCAAAGAACTCCTCCCAGATATGAAAGGTAAAACTCTTGAGCGCTGCACTCATTGTTTGGCTGGAAAACAACATAGAGTTTCATTTTCTAGAAGCAATCCTCCAAGAAGAAGAAACCATGTTCTTGATTTGGTTCACACTGATGTATGCTCAATGACCGAGAAATCACTAGGTGGTGCATCATATTTTGTAACATTCATCGATGACCACTCAAGAAAGGTGTTCGTGTCTTTGTTGAAGACTAAAGATCAGGTGCTCGCATCATTGATAAGCATAATTTATATGCTTATTTTCTTCACTATTTCGGGTAGTGGAGGTCATGGTATGAAGGTG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_91513.p1 GENE.R_Transcript_91513~~R_Transcript_91513.p1 ORF type:3prime_partial len:563 (+),score=92.12,UBN2_2|PF14227.2|7.1e-35,UBN2|PF14223.2|5.8e-22,gag_pre-integrs|PF13976.2|7e-13,UBN2_3|PF14244.2|1.3e-08 R_Transcript_91513:143-1828(+)
MEGTVTHDGEMFKLTADNYSYWKPMMEDHLYCKDLYEPISNETMPKGKDAKDWELLNRKAVAMIRKYIDRSLFEHVSTYTNAYELWKKLESMIQKKTPRNKAHLARRLVKLEYNDGQSMIEHLNNFKGLVNQLTKIEMKIDDELQALLLLSSLPESWDTLVVTLSNSAPEGKLSMDGVTDSLLNEESRRKERGISGRSEANVIENRGRSETRGRNNTRGHDRSRGRSKSRSKITCYYCGKPGHKKSECRSYKRDQKNGAVKPDTIDPKKKEDKSTTAVATNDVDDVFLIGEDNYLNIADNDCSWIVDSGASFHVTPHQEFFSSYQVGDFGTVKMGNQVSSKIVGIGTVNLITNTGCELLLKDVRHVPDMRLNLISAGKLDDAGYMNSFGAGKWKLTRSSIIVARGRKEGSLYVTQAKLCKGETNVAHDNSCLEIWHKRLGHMSGKGLQVLTRKELLPDMKGKTLERCTHCLAGKQHRVSFSRSNPPRRRNHVLDLVHTDVCSMTEKSLGGASYFVTFIDDHSRKVFVSLLKTKDQVLASLISIIYMLIFFTISGSGGHGMKV

Click here to download the sequence:
Link to NCBI Protein BLAST