Transcript Information: R_Transcript_9191.p1


Annotated TAIR IDAT2G41700.1
Annotated Gene NameATP-binding cassette A1
Annotated Gene Symbol(s)ABCA1, AtABCA1
Annotation TypeOrtholog
Chromosome Positionchr2:17383239-17396110 | Reverse length=1882
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 19.1752851857945
Replicate 24.3789075734525
Replicate 36.1860441101909
Condition 2: 8 Hour
Replicate 16.1672953958035
Replicate 26.7680530064765
Replicate 39.2116997212552
Condition 3: 24 Hour
Replicate 15.3650062879715
Replicate 23.6444251321863
Replicate 36.7535858846737


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_9191.p1 GENE.R_Transcript_9191~~R_Transcript_9191.p1 ORF type:complete len:1870 (+),score=316.01,ABC2_membrane_3|PF12698.3|4.7e-20,ABC2_membrane_3|PF12698.3|1.6e-45,ABC_tran|PF00005.23|6.7e-28,ABC_tran|PF00005.23|6.3e-26,AAA_21|PF13304.2|2.8e-08,AAA_21|PF13304.2|1.3e-08 R_Transcript_9191:240-5849(+)
ATGGGCGAATTCAGGCGCCAGTTGAAGGCGATGCTTCGCAAGAACTGGCTGCTCAAAATCCGTCATCCTTATGTCACTTTTGCTGAGATTTTTCTTCCAGCAGTTGTGATGCTGATGTTAATGGCTGTGCGAACGCAAGTTGACACACGTGTCCACCCTGCCCAGCCGTATATCCGGAAAGATATGCTAGTTGAGGTGGGTAAGGGCGATAAATCTCCTCCCTTAAACCAGATCCTGGAGCTCTTGGTGGCCAGTAACGAATATTTGGCTTTTGCACCTGATTCAAACAAGACAAGAGCAGTTGTTAGTTTGATGTCAATGCAATATCCTTTATTGAAGGTCGTCACTAGATTCTATAAGGATGAAGTGGAACTTGAAACTTACATTCGTTCAGATTCCTATGGTACATGTGACCAAGTGAAGAACTGTTCAAATCCCAAACTCAGAGGGGCAGTGGTATTTCACAGTCAAGGTCCTGAGTTATATGACTACAGTATACGTCTTAACCACACTTGGGCTTTCTCAGGATTTCCTGACGTCAAAACAATCATGGATGTTAATGGTGCTTATGTCAATGATTTGGAGCTGGGTGTGAATCCTGTTCCTATTATGCAGTATGGCTTTAGTGGCTTCTTGACTCTTCAACAAGTTTTGGATTCCTTTATAATATTTGCTGCACAGCAGAGTGGTACTGGCATAAACTCTGAAGATTCTACTGTGCCTATGTCAGCATCATCTGACAAACCATCCTTGCTGATGCTTTCTTCCATGAAGTTCATTCCATCAACTATTAGGCTTGTCCCCTTTCCGACGCGTGAGTACACTGATGATGAGTTCCAATCCATTATCAAGAAAGTCATGGGAGTGTTGTACCTGCTGGGGTTTCTGTATCCAATATCTCGACTCATAAGTTATTCTGTGTTCGAAAAGGAGCAGAAAATCAGGGAAGGACTTTACATGATGGGCCTTAAAAGTGAGATTTTGCATATCTCATGGTTCATAACATACACCTTACAGTTTGCAGTTTCATCTGGAGTTCTTACAATCATCACAATGTGCTCCCTTTTTGAGTACAGTGATAAGACACTGGTGTTTACATACTTTTTTTTCTTTGGCCTGAGTGCAATGACTCTTTCTTTCTTAATTTCTACATTTTTCACGAGGGCTAAAACAGCTGTGGCAGTTGGAACACTTTCTTTTCTAGGAGCCTTTTTCCCCTACTACACAGTCAACGATCCAGATGTTCCAATGGTACTGAAGGCTACTGCATCATTGCTTTCTCCCACAGCCTTTGCATTGGGATCAATTAACTTTGCTGATTATGAGAGGGCACATGTTGGGTTACGTTGGAGCAATATATGGCGTGAATCATCTGGAGTGAATTTTCTTCTCTGTCTAAGCATGATGGTTTTTGACGCACTACTATATTGTGTCATTGGTGTCTACCTGGATAAGGTGCTTTCCAAAGAAGGTAATGTACGTTGTTTTTGGGATTTTCTACCCAAGGGTCTCTGGCAAAAGAAAGATAGAATTAAGCCTCATGCTTCTGGTTCTGGAATGAAATTGGAGGGTATAAGCTGGGAAATGAAACAACAAGAAGTTGAGGGCAGGTGCCTCCAGATAAGGAATCTTAGTAAAACATACACTTCAAAGAAAGGGAATTGCTGTGCGGTTAACACATTACAGCTGACTTTGTATGAACATCAGGTTCTTGCTCTTCTAGGACATAATGGAGCTGGTAAGAGCACAACCATTTCTATGCTCGTAGGACTCATTCCTCCGACTTCTGGTGATGCTTTGGTTTTCGGGAGAAATATTTTGACAGATATGAATGATATTCGCAAGGACTTGGGGGTGTGCCCTCAGAGTGATATCCTCTTCCCAGAGCTAAGCGTGAAAGAGCATTTGGAATTGTTTGGGATATTAAAAGGCGTGAAGGAAGAGGCGCTTGAGAGTGCTGTCACCAAAATGATTGAGGAAGTTTGTCTGGCTGACAAGATCAACACTGTTGCAAGTGCCTTGTCTGGTGGCATGAAAAGGAAACTTTCCCTGGGAATCGCCCTCATAGGAAACAGTAAGGTTATTATTCTCGATGAACCTACCAGTGGAATGGATCCTTATTCAATGCGCTTGACATGGCAGCTGATTAAAAAAATTAAGAAAGGAAGGATAGTATTACTGACCACACATTCAATGGATGAAGCTGAAGCACTAGGAGATCGTATAGCTATCATGGCAAACGGCTCTTTGAAATGTTGTGGAAGCTCCCTCTTCCTGAAGCATCAATATGGGGTTGGTTATACCCTTACTTTAGTGAAGTCTGCTGCAGGTGCCTCTTTAGCTGCTGATATTGTTCGTCAGCATATTCCATCGGCCACAGTAGTGAGTGAGGTGGGTACAGAGATATCTTTTAAGCTTCCTTTGGCATCATCATCTTGCTTTGAGAGTATGTTCCAAGAAATTGAAAGCTACATGAAGAGTTCAGTCTCTAACACTGAAGCAGGCGCAATTGAGAATGAGTCTCCTGGGATTGAAAGTTATGGTATCTCTGTCACAACATTGGAAGAGGTATTCTTGAGAGTTGCTGGATGTGACTTTGATGAAATTGAGTGTATAGAACACAAAACATCACTCTCGGATCCTATGCTCAGTCAAGCACCTGGATATCAGGCATCTAAAAAAGGCTTTTCTGCAAAGCTTTGCACAAGTTGCTACAACTTCCTTATGTTAATGTGTGTTATAGTCGGGAGAAGCTGTGAGTTCTTCTTTGCTGCAATTTGGTGTTTTATAAACTTTGTGGGGACACAATGTTGCTGTACTGCTGTTATTTCAAGGTCTGATTTTTGGCAACATTCAAAGGCTTTACTGAAAAAGAGAGCAATATCTGCTAGGAGGGATCAGAAAACAATTGTTTTCCAGCTTTTCATTCCAGCAGTCTTTTTGTTTGCTGGGCTTCTTTTCCTTCAACTCAAGACACACCCTGATCAGCAGTCTGTAACTTTTACAACTTCAAACTTTAATCCTCTCTTGCATGGTGGAGGTGGTGGTGCTCCGATTCCGTTTGATCTATCCTATTCTATCTCACAAGAGATCGCCTCATATATAGACGGTGGGTGGATTCAAGAGTTCAAACCAAGTACCTACAGATTCCCAGACTCAGAAAAGGCATTAGCAGATGCCATAGAAGCTGCTGGACCAACTTTGGGACCACGATTACTTTCAATGAGTGACTTTCTGATGTCTAGCTTAAAAGAATCATATCAGTCAAGGTATGGTGCAATTGTAATGGACAATCAGAGTGATGATGGAACTCTGGGGTATACAGTATTACACAACAACTCCTGCCAGCATGCTGCTCCAACTTTTATCAATTTGATGAATTCAGCTATCCTTCGGCTTGCTACCTCTGACAGAAATATGTCAATTCGAACACGTAATCATCCTCTACCGTTGACCAACAGCCAACACCTGCAACGTCATGATTTGGATGCATTCTCTGCTGCTATTATCATTTCTATAGCTTTCTCATTTATTCCTGCTTCATTTGCTGTTCCTGTAGTAAAGGAGCGTGAAGTAAAAGCTAAGCATCAGCAGCTACTTAGTGGGGTGTCTATATTATCATACTGGACTTCCACCTACTTGTGGGACTTCTTCAGCTTCCTATTACCTTCATCATTTGCAATTATTCTTTTCTACATATTTGGTCTGGAACAGTTTGTGGGAAAAGGAGGCTTCTGCCCAACTGTAATTATGTTTATGGGGTACGGATTAGCAATTGCATCTTCAACATACTGTCTAACATTTTTTTTCTCTGATCACACAGTGGCCCAGAATGTAATTCTACTGGTCCATTTTTTCACTGGACTCATTCTTATGGTAATCTCATTTATAATGGGTCTGATGGAAACAACTGCAAATGTAAATTCTTACCTGAAGAACATTTTCAGGCTATCCCCAGGATTCTGCTTTGCTGATGGTCTTGCATCACTTGCTCTTTTACGCCAAGGGATGAAAGATAAATCCAGTAATCAGGTTCTTGACTGGAATGTTACGGGTGCCTCAATTTGCTATTTGGGTGTTGAGAGCATCATCTATTTTTTATTAACACTTGGACTTGAAGTCTTACCCCCTCACAAAGTAGTACCCAGTACACTTGATTGTTGCTGGAGAAGGCTACAGAGTCTCTGTCGCGGGAACAGCAGCAGTGTCTTGGAGCCTCTATTGGATTCATCTTCAGATGCTATGGTTCTTGGCCTTGATGAGGATATAGATGTAAGAGTGGAACGAAATCGGGTGCTATCCGGTGCTGCAGATAGGGCGATTATATACTTACGTAATCTGCGGAAGGTTTACCCTGGTGGGAAGCTTCAAAGTCCAAAAGTTGCAGTTCATTCACTTACTTTTGCTGTCCATGAAGGAGAATGTTTTGGTTTTCTAGGAACAAATGGAGCTGGAAAGACCACCACATTGTCAATGCTATCTGGAGAAGTATGTCCTTCTGAGGGGACTGCCTATATATTTGGGAAAGACATATGTGCAATTCCAAAGGCGGCTCGCCAGCATATTGGGTACTGTCCCCAGTTTGATGCTTTGCTAGAACATTTGACTGTCAGGGAGCATCTTGAGCTTTATGCAAGAATCAAAAGAGTTCCTGATTATAGAATTGAAGAGGTGGTTACGGAGAAGATACTACAGTTTGACTTGCTGAAGCATGCGGATAAACCATCATTTTCCCTTAGTGGGGGAAACAAGCGCAAGCTGTCTGTGGCAATTGCTATGATTGGAGATCCTCCAATTGTCATACTCGATGAGCCATCTACAGGCATGGATCCCATTGCAAAGCGGTTCATGTGGGATGTTATTTCCCGCCTATCTACAAGACGAGGGAAAACAGCTGTTATACTCACTACCCACAGTATGAATGAAGCTCAGGCACTGTGCACCCGGATGGGGATAATGGTTGGAGGGCACCTTAGATGCATTGGAAGTCCCCAGCACTTGAAGACACGATTTGGAAATCATCTTGAGTTGGAGGTAAAACCAATGGAAGTTGGCTCTTTGGAATTGGAAACACTTTCACTGATGATTCAAGAAAAGCTCTCTGAAGCTCCTTCTCATCCAAGAAGCTTATTAAGTGACCTTGAGACTTGCATTGGAGGCACTGTTATCGCATCTGATAGTGCATCAGTGGCTGAAATTAGCTTGTCAAAGGACATGGTAATCAAAGTAGCCCAATGGCTTGGCAATGAAGAAAGAGTCAAGGCTCTAGTAAATCCAAATGTGGCATCTGAGGGATTTCTCAGTGAACAATTATCAGAGCAACTGGTCCGTGATGGTGGAATTCCATTGCCAGTGTTTTCTGAATGGTGGTTGACAAAGGAAAAGATCTCTGTAATTGAAACTTTTATTCTATCATCCTTTCCTGGTGCTACCTTCCAAGGGTGCAATGGATTAAATGCCAGATACCAGTTGCCGTATGGGAAAGATCTGTCATTAGCAGATGCTTTTGGCCACATAGAAAGGAACAGGACTCGGCTCGGAATAGCAGAATATAGCATCAGCCAATCTACTCTCGAGACCATTTTCAATCACTTCGCTGCAAACTCATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_9191.p1 GENE.R_Transcript_9191~~R_Transcript_9191.p1 ORF type:complete len:1870 (+),score=316.01,ABC2_membrane_3|PF12698.3|4.7e-20,ABC2_membrane_3|PF12698.3|1.6e-45,ABC_tran|PF00005.23|6.7e-28,ABC_tran|PF00005.23|6.3e-26,AAA_21|PF13304.2|2.8e-08,AAA_21|PF13304.2|1.3e-08 R_Transcript_9191:240-5849(+)
MGEFRRQLKAMLRKNWLLKIRHPYVTFAEIFLPAVVMLMLMAVRTQVDTRVHPAQPYIRKDMLVEVGKGDKSPPLNQILELLVASNEYLAFAPDSNKTRAVVSLMSMQYPLLKVVTRFYKDEVELETYIRSDSYGTCDQVKNCSNPKLRGAVVFHSQGPELYDYSIRLNHTWAFSGFPDVKTIMDVNGAYVNDLELGVNPVPIMQYGFSGFLTLQQVLDSFIIFAAQQSGTGINSEDSTVPMSASSDKPSLLMLSSMKFIPSTIRLVPFPTREYTDDEFQSIIKKVMGVLYLLGFLYPISRLISYSVFEKEQKIREGLYMMGLKSEILHISWFITYTLQFAVSSGVLTIITMCSLFEYSDKTLVFTYFFFFGLSAMTLSFLISTFFTRAKTAVAVGTLSFLGAFFPYYTVNDPDVPMVLKATASLLSPTAFALGSINFADYERAHVGLRWSNIWRESSGVNFLLCLSMMVFDALLYCVIGVYLDKVLSKEGNVRCFWDFLPKGLWQKKDRIKPHASGSGMKLEGISWEMKQQEVEGRCLQIRNLSKTYTSKKGNCCAVNTLQLTLYEHQVLALLGHNGAGKSTTISMLVGLIPPTSGDALVFGRNILTDMNDIRKDLGVCPQSDILFPELSVKEHLELFGILKGVKEEALESAVTKMIEEVCLADKINTVASALSGGMKRKLSLGIALIGNSKVIILDEPTSGMDPYSMRLTWQLIKKIKKGRIVLLTTHSMDEAEALGDRIAIMANGSLKCCGSSLFLKHQYGVGYTLTLVKSAAGASLAADIVRQHIPSATVVSEVGTEISFKLPLASSSCFESMFQEIESYMKSSVSNTEAGAIENESPGIESYGISVTTLEEVFLRVAGCDFDEIECIEHKTSLSDPMLSQAPGYQASKKGFSAKLCTSCYNFLMLMCVIVGRSCEFFFAAIWCFINFVGTQCCCTAVISRSDFWQHSKALLKKRAISARRDQKTIVFQLFIPAVFLFAGLLFLQLKTHPDQQSVTFTTSNFNPLLHGGGGGAPIPFDLSYSISQEIASYIDGGWIQEFKPSTYRFPDSEKALADAIEAAGPTLGPRLLSMSDFLMSSLKESYQSRYGAIVMDNQSDDGTLGYTVLHNNSCQHAAPTFINLMNSAILRLATSDRNMSIRTRNHPLPLTNSQHLQRHDLDAFSAAIIISIAFSFIPASFAVPVVKEREVKAKHQQLLSGVSILSYWTSTYLWDFFSFLLPSSFAIILFYIFGLEQFVGKGGFCPTVIMFMGYGLAIASSTYCLTFFFSDHTVAQNVILLVHFFTGLILMVISFIMGLMETTANVNSYLKNIFRLSPGFCFADGLASLALLRQGMKDKSSNQVLDWNVTGASICYLGVESIIYFLLTLGLEVLPPHKVVPSTLDCCWRRLQSLCRGNSSSVLEPLLDSSSDAMVLGLDEDIDVRVERNRVLSGAADRAIIYLRNLRKVYPGGKLQSPKVAVHSLTFAVHEGECFGFLGTNGAGKTTTLSMLSGEVCPSEGTAYIFGKDICAIPKAARQHIGYCPQFDALLEHLTVREHLELYARIKRVPDYRIEEVVTEKILQFDLLKHADKPSFSLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWDVISRLSTRRGKTAVILTTHSMNEAQALCTRMGIMVGGHLRCIGSPQHLKTRFGNHLELEVKPMEVGSLELETLSLMIQEKLSEAPSHPRSLLSDLETCIGGTVIASDSASVAEISLSKDMVIKVAQWLGNEERVKALVNPNVASEGFLSEQLSEQLVRDGGIPLPVFSEWWLTKEKISVIETFILSSFPGATFQGCNGLNARYQLPYGKDLSLADAFGHIERNRTRLGIAEYSISQSTLETIFNHFAANS*

Click here to download the sequence:
Link to NCBI Protein BLAST