Transcript Information: R_Transcript_92053.p1


Annotated TAIR IDAT5G56930.1
Annotated Gene NameCCCH-type zinc finger family protein
Annotated Gene Symbol(s)emb1789
Annotation TypeOrtholog
Chromosome Positionchr5:23027949-23030565 | Reverse length=675
E-Value6.1E-51
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.2863834181276
Replicate 20.28491848164079
Replicate 30.76515198651031
Condition 2: 8 Hour
Replicate 11.2268491831605
Replicate 20.6302127450021
Replicate 30.60631684744508
Condition 3: 24 Hour
Replicate 10.59910770427203
Replicate 20.69066572726234
Replicate 30.93673892710103


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_92053.p1 GENE.R_Transcript_92053~~R_Transcript_92053.p1 ORF type:complete len:958 (+),score=223.37,Torus|PF16131.1|4.5e-06,Torus|PF16131.1|0.0045,Torus|PF16131.1|0.14,zf-CCCH|PF00642.20|0.00063,zf-CCCH|PF00642.20|0.037,zf-CCCH|PF00642.20|2.1e-05 R_Transcript_92053:273-3146(+)
ATGACAACCCCATCAAAAAATCTAATAGCAGAATTCTTTGGACCTCCAAAGAAACGACCTTTGAGGAGCAACACTATGCGTACGGTTGCCAGAATTTATTCTGTCTTTCCGGAGTTAAACCCCTTGAACCGGCCCCCCTCATTTGCTCAAACTCCAGCAAACAATTCTGGGTCTCGTAACAGTGGTCAGGATAATCCTTTAAGAGCAGATTATGTGGGTGATGGTTTGCCACCGAGGAGTGAGGAAGAAGCGAGTCGAAAATTGGTTGGTGACGATGGTGTGAAGGTTCAGGATGTGTTTGCTCATAGAGCGGTAAGTGATGGTGGTAACGCTGGGGTTTTGGGTGAAGGAGACGGTTTGAATGGCTCGGAAATGATGATAGATAAGTCTGGTGAGAAAAATGATACTGAAACCATTGGTAAAATGGCTATTGATGACAAGGACACTAGTGATCACAATACGGAGGGCCACAATGTCCAAGAAAATTTGTTAGGTATTGAGAGAATTCTCATGGATGAATCAGATGAATTAGGTCAATTGCAACTGCCAGATGAAGATATCAACTTTGACATTTTTGATGATGTTGGCTCCTTTCTGAATACAGATGTTCTTGCTAAGCATTCTGCACCAGTTGAAAGCAATGTCTGTGGAGGACTGAATATTCAAGGGAACATGAACGAGGATGTAGTAGGCGAGAAGAAAGGGAAAGATATTGAAGCAAAGGGCTCAACTTTTGGAGGTGATGTAGCTTCTGATGCTGAAGTGTCTGTGGAGAGAGATATCTCCAACTGTTTAGACATGGCAGAAAAGCTTCCAGGTACACATCCTGATCATGTTGGGAGAGAGGAGACAAACATTTGCAATGAGAAAGTTCCTCAGCATTTATCAGAAAAGGAAGGTTTAACTTTTTCCGTGTCAATGAGTGAAGGCAAGGGAGGGTCTGCTTTAATAAATTCTGTTGATAAAGAGGTACACAAATCAGGTAGTCCTGTCAATCAAAAAACAAAGAAGCGTGAGAAGGCAGACCAAAAGGGTGTAAAATCAGGTAAAAGGAAGCTTATGTCTGCAGATGCCGAGGTTTCCAATATCACAAAATCGGGGGGCTCTGATACATCAGTTCATGGGAAGATGCTGAAGCAAAATGTGTCTGGCAGAGGGAACTTGCCTACAACAAAGGTTGGCAAATGTTCGCCTAAGAGTATGGAGAATATTAAGTACACTCGAGAACAGCTCCTGCATCTTCAACAGATGGATGCTGTTTCCAAGGATATTTTGAAAGTTGTACAAGAAATCGGCGGCGAGTTATTTGGTGGAGGTCAGAATTGTGCCACCCGAGAATCAATTGAGGTCCGCGGCTTCAACGAGGAACAGCTAGGTGCTCCTACAGAGGAGAAGAAAGTGGGGGAAAAGGATCATGCTATGTTGAAGAATAAAAAACGGGGGTCTTCATCAACTGCAAAGAAGGAGAATAAAAAGAGGAAGAAAAGGCAGAAGCGAGCAGAAAATAACAGGAAACTTGGTGTCAAGAGGTTGAAGCTTAGACCACCTGTTTTGAAACCAAAAGTGGTGCCACCTTGTCGGCATTACCTCAAAGGAAGCTGCTATGAGGGAGAGAAATGCAAGTTTTCACATGATGTAATACCCCGAACAAAATCCACGCCTTGCTCCTATTTCGCACGCAACGTGTGCTTGAAAGGGGATGACTGTCCATTTGATCATCAGTTATCCAAGTATACATGCACCAATTATGCGACTACAGGCTTCTGCAGTAGAGGTGATAGCTGCTTGTTTTCCCATAAGATTAAGGATAAGGAAGGATCAGAATCCACCGTTTGTGTCTTTAAAGAGATCAAGTCATCGGGTCACCTTGATAAGTCAATCTCCAAACAGCAGCGCGATGGCCAAGCATCCTCTTCCAGAGTTCCTAGTATAAATCTAGAGGAGAATTCAGTGATACTGATCAATCAGCCTGGAAAAGCACCAAAAGGTTTGAGCTTTCTCTCATTTGGAAAATCTCCACAGGATGATTCTGGTCAGCATAAAGAGGTGAACTCATCCCAGCAAAGCAAAGTTGCTACTGGAACTGGTGGTGAAACAAACCGGGCACAACCAGAAAGATCAGGTAATGTGAGTAACGCTATAATGGACAGCTCAGCATCAGTAGCACCTCGAGGAATCGGTTTTCTCTCATGCGACAAAACATCAACTGGTAGCTCTGTCATCAAGGCACAAACCATCTCACCAACCCCTAGGGACCAGCCAAGCATTCTTTCATTTGGGAAATCACTTCTGCATCAATCTTCTAAAGATCAACAAGCAAACTCATCTATGAGAATTGATGGTGGTGTTAACAAAGGTAATCAGCCAAACCAGGAAACACCAAATAGAGAATTAAATCGCTGTGAAATATTCAAAGATAATCCGACTCCAACAACCCCAAAAGGAATTATTTTTCCGGCTTCTGGTGGACCTTCATATGATACTTCTGGTGACAAATTGCAAGCTGTCTCTTCTACTGAGCTTAGTAATTCTCAGATATGCGTTAGAGAAAAGGGAGCTGTGCATGAATCATGCAAATTGAAAGCAATACAAACCGAGGAACGGTGTTCTCCTGCTTCTCCTGGTCAACGCTCTATCAAGTTTGGTGTACCAGTCAAAAGCACACCGATTACCGCTCAGAGGGCACTTTTGTCCACTCTTGCATTTGCAGCCAAGTATGAATCTGGGATAAAAATGAGTCCGGCAGCTGTCACTAGGGAGGTCAATAAGAATGAAGCGACAAGTAGTGGTAGTGGACGCAGACAGAATGAGCCGAAAAAAGCTTCGGCCATTTTAGAGTTTTTGTACAGTGGGGGCAATAAACAGAAGCAGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_92053.p1 GENE.R_Transcript_92053~~R_Transcript_92053.p1 ORF type:complete len:958 (+),score=223.37,Torus|PF16131.1|4.5e-06,Torus|PF16131.1|0.0045,Torus|PF16131.1|0.14,zf-CCCH|PF00642.20|0.00063,zf-CCCH|PF00642.20|0.037,zf-CCCH|PF00642.20|2.1e-05 R_Transcript_92053:273-3146(+)
MTTPSKNLIAEFFGPPKKRPLRSNTMRTVARIYSVFPELNPLNRPPSFAQTPANNSGSRNSGQDNPLRADYVGDGLPPRSEEEASRKLVGDDGVKVQDVFAHRAVSDGGNAGVLGEGDGLNGSEMMIDKSGEKNDTETIGKMAIDDKDTSDHNTEGHNVQENLLGIERILMDESDELGQLQLPDEDINFDIFDDVGSFLNTDVLAKHSAPVESNVCGGLNIQGNMNEDVVGEKKGKDIEAKGSTFGGDVASDAEVSVERDISNCLDMAEKLPGTHPDHVGREETNICNEKVPQHLSEKEGLTFSVSMSEGKGGSALINSVDKEVHKSGSPVNQKTKKREKADQKGVKSGKRKLMSADAEVSNITKSGGSDTSVHGKMLKQNVSGRGNLPTTKVGKCSPKSMENIKYTREQLLHLQQMDAVSKDILKVVQEIGGELFGGGQNCATRESIEVRGFNEEQLGAPTEEKKVGEKDHAMLKNKKRGSSSTAKKENKKRKKRQKRAENNRKLGVKRLKLRPPVLKPKVVPPCRHYLKGSCYEGEKCKFSHDVIPRTKSTPCSYFARNVCLKGDDCPFDHQLSKYTCTNYATTGFCSRGDSCLFSHKIKDKEGSESTVCVFKEIKSSGHLDKSISKQQRDGQASSSRVPSINLEENSVILINQPGKAPKGLSFLSFGKSPQDDSGQHKEVNSSQQSKVATGTGGETNRAQPERSGNVSNAIMDSSASVAPRGIGFLSCDKTSTGSSVIKAQTISPTPRDQPSILSFGKSLLHQSSKDQQANSSMRIDGGVNKGNQPNQETPNRELNRCEIFKDNPTPTTPKGIIFPASGGPSYDTSGDKLQAVSSTELSNSQICVREKGAVHESCKLKAIQTEERCSPASPGQRSIKFGVPVKSTPITAQRALLSTLAFAAKYESGIKMSPAAVTREVNKNEATSSGSGRRQNEPKKASAILEFLYSGGNKQKQ*

Click here to download the sequence:
Link to NCBI Protein BLAST