Transcript Information: R_Transcript_92055.p1


Annotated TAIR IDAT5G56930.1
Annotated Gene NameCCCH-type zinc finger family protein
Annotated Gene Symbol(s)emb1789
Annotation TypeHomolog
Chromosome Positionchr5:23027949-23030565 | Reverse length=675
E-Value6E-38
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.367485674132
Replicate 21.2082561585926
Replicate 31.6912683567192
Condition 2: 8 Hour
Replicate 11.4888256645448
Replicate 22.8406331980659
Replicate 33.8825920653814
Condition 3: 24 Hour
Replicate 13.016172285073
Replicate 22.0355016348524
Replicate 32.6616969868974


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_92055.p1 GENE.R_Transcript_92055~~R_Transcript_92055.p1 ORF type:complete len:921 (+),score=207.97,Torus|PF16131.1|4.3e-06,Torus|PF16131.1|0.0049,Torus|PF16131.1|0.13,zf-CCCH|PF00642.20|0.0006,zf-CCCH|PF00642.20|0.035,zf-CCCH|PF00642.20|2.1e-05 R_Transcript_92055:273-3035(+)
ATGACAACCCCATCAAAAAATCTAATAGCAGAATTCTTTGGACCTCCAAAGAAACGACCTTTGAGGAGCAACACTATGCGTACGGTTGCCAGAATTTATTCTGTCTTTCCGGAGTTAAACCCCTTGAACCGGCCCCCCTCATTTGCTCAAACTCCAGCAAACAATTCTGGGTCTCGTAACAGTGGTCAGGATAATCCTTTAAGAGCAGATTATGTGGGTGATGGTTTGCCACTGAGGAGTGAGGAAGAAGCGAGCCGAAAATTGGTTGGTGATGATGATATGAAGGTTCAGGATGTGTCTACTTGTAGCGCGGTAAGTGATGGTAGTAACGCTGTGGTTTTTGGTGAAGGAGACGGTTTGAATGGCTCGGAAATGATGATAGATAAGTCTGGTGAGAAAAATGATACTGAAACCATTGGTAAAATGGCTATTGATGACAAGGACACTAGTGATCACAATACGGAGGGCCACAATGTCCAAGAAAATTTGTTAGATGTTCTTGCTAAGCATTCTGCACCAGTTGAAAGCAATGTCTGTGGAGGACTGAATATTCAAGGGAACATGAACGAGGATGTAGTAGGCGAGAAGAAAGGGAAAGATATTGAAGCAAAGGGCTCAACTTTTGGAGGTGATGTAGCTTCTGATGCTGAAGTGTCTGTGGAGAGAGATATCTCCAACTGTTTAGACATGGCAGAAAAGCTTCCAGGTACACATCCTGATCATGTTGGGAGAGAGGAGACAAACATTTGCAATGAGAAAGTTCCTCAGCATTTATCAGAAAAGGAAGGTTTAACTTTTTCCGTGTCAATGAGTGAAGGCAAGGGAGGGTCTGCTTTAATAAATTCTGTTGATAAAGAGGTACACAAATCAGGTAGTCCTGTCAATCAAAAAACAAAGAAGCGTGAGAAGGCAGACCAAAAGGGTGTAAAATCAGGTAAAAGGAAGCTTATGTCTGCAGATGCCGAGGTTTCCAATATCACAAAATCGGGGGGCTCTGATACATCAGTTCATGGGAAGATGCTGAAGCAAAATGTGTCTGGCAGAGGGAACTTGCCTACAACAAAGGTTGGCAAATGTTCGCCTAAGAGTATGGAGAATATTAAGTACACTCGAGAACAGCTCCTGCATCTTCAACAGATGGATGCTGTTTCCAAGGATATTTTGAAAGTTGTACAAGAAATCGGCGGCGAGTTATTTGGTGGAGGTCAGAATTGTGCCACCCGAGAATCAATTGAGGTCCGCGGCTTCAACGAGGAACAGCTAGGTGCTCCTACAGAGGAGAAGAAAGTGGGGGAAAAGGATCATGCTATGTTGAAGAATAAAAAACGGGGGTCTTCATCAACTGCAAAGAAGGAGAATAAAAAGAGGAAGAAAAGGCAGAAGCGAGCAGAAAATAACAGGAAACTTGGTGTCAAGAGGTTGAAGCTTAGACCACCTGTTTTGAAACCAAAAGTGGTGCCACCTTGTCGGCATTACCTCAAAGGAAGCTGCTATGAGGGAGAGAAATGCAAGTTTTCACATGATGTAATACCCCGAACAAAATCCACGCCTTGCTCCTATTTCGCACGCAACGTGTGCTTGAAAGGGGATGACTGTCCATTTGATCATCAGTTATCCAAGTATACATGCACCAATTATGCGACTACAGGCTTCTGCAGTAGAGGTGATAGCTGCTTGTTTTCCCATAAGATTAAGGATAAGGAAGGATCAGAATCCACCGTTTGTGTCTTTAAAGAGATCAAGTCATCGGGTCACCTTGATAAGTCAATCTCCAAACAGCAGCGCGATGGCCAAGCATCCTCTTCCAGAGTTCCTAGTATAAATCTAGAGGAGAATTCAGTGATACTGATCAATCAGCCTGGAAAAGCACCAAAAGGTTTGAGCTTTCTCTCATTTGGAAAATCTCCACAGGATGATTCTGGTCAGCATAAAGAGGTGAACTCATCCCAGCAAAGCAAAGTTGCTACTGGAACTGGTGGTGAAACAAACCGGGCACAACCAGAAAGATCAGGTAATGTGAGTAACGCTATAATGGACAGCTCAGCATCAGTAGCACCTCGAGGAATCGGTTTTCTCTCATGCGACAAAACATCAACTGGTAGCTCTGTCATCAAGGCACAAACCATCTCACCAACCCCTAGGGACCAGCCAAGCATTCTTTCATTTGGGAAATCACTTCTGCATCAATCTTCTAAAGATCAACAAGCAAACTCATCTATGAGAATTGATGGTGGTGTTAACAAAGGTAATCAGCCAAACCAGGAAACACCAAATAGAGAATTAAATCGCTGTGAAATATTCAAAGATAATCCGACTCCAACAACCCCAAAAGGAATTATTTTTCCGGCTTCTGGTGGACCTTCATATGATACTTCTGGTGACAAATTGCAAGCTGTCTCTTCTACTGAGCTTAGTAATTCTCAGATATGCGTTAGAGAAAAGGGAGCTGTGCATGAATCATGCAAATTGAAAGCAATACAAACCGAGGAACGGTGTTCTCCTGCTTCTCCTGGTCAACGCTCTATCAAGTTTGGTGTACCAGTCAAAAGCACACCGATTACCGCTCAGAGGGCACTTTTGTCCACTCTTGCATTTGCAGCCAAGTATGAATCTGGGATAAAAATGAGTCCGGCAGCTGTCACTAGGGAGGTCAATAAGAATGAAGCGACAAGTAGTGGTAGTGGACGCAGACAGAATGAGCCGAAAAAAGCTTCGGCCATTTTAGAGTTTTTGTACAGTGGGGGCAATAAACAGAAGCAGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_92055.p1 GENE.R_Transcript_92055~~R_Transcript_92055.p1 ORF type:complete len:921 (+),score=207.97,Torus|PF16131.1|4.3e-06,Torus|PF16131.1|0.0049,Torus|PF16131.1|0.13,zf-CCCH|PF00642.20|0.0006,zf-CCCH|PF00642.20|0.035,zf-CCCH|PF00642.20|2.1e-05 R_Transcript_92055:273-3035(+)
MTTPSKNLIAEFFGPPKKRPLRSNTMRTVARIYSVFPELNPLNRPPSFAQTPANNSGSRNSGQDNPLRADYVGDGLPLRSEEEASRKLVGDDDMKVQDVSTCSAVSDGSNAVVFGEGDGLNGSEMMIDKSGEKNDTETIGKMAIDDKDTSDHNTEGHNVQENLLDVLAKHSAPVESNVCGGLNIQGNMNEDVVGEKKGKDIEAKGSTFGGDVASDAEVSVERDISNCLDMAEKLPGTHPDHVGREETNICNEKVPQHLSEKEGLTFSVSMSEGKGGSALINSVDKEVHKSGSPVNQKTKKREKADQKGVKSGKRKLMSADAEVSNITKSGGSDTSVHGKMLKQNVSGRGNLPTTKVGKCSPKSMENIKYTREQLLHLQQMDAVSKDILKVVQEIGGELFGGGQNCATRESIEVRGFNEEQLGAPTEEKKVGEKDHAMLKNKKRGSSSTAKKENKKRKKRQKRAENNRKLGVKRLKLRPPVLKPKVVPPCRHYLKGSCYEGEKCKFSHDVIPRTKSTPCSYFARNVCLKGDDCPFDHQLSKYTCTNYATTGFCSRGDSCLFSHKIKDKEGSESTVCVFKEIKSSGHLDKSISKQQRDGQASSSRVPSINLEENSVILINQPGKAPKGLSFLSFGKSPQDDSGQHKEVNSSQQSKVATGTGGETNRAQPERSGNVSNAIMDSSASVAPRGIGFLSCDKTSTGSSVIKAQTISPTPRDQPSILSFGKSLLHQSSKDQQANSSMRIDGGVNKGNQPNQETPNRELNRCEIFKDNPTPTTPKGIIFPASGGPSYDTSGDKLQAVSSTELSNSQICVREKGAVHESCKLKAIQTEERCSPASPGQRSIKFGVPVKSTPITAQRALLSTLAFAAKYESGIKMSPAAVTREVNKNEATSSGSGRRQNEPKKASAILEFLYSGGNKQKQ*

Click here to download the sequence:
Link to NCBI Protein BLAST