Transcript Information: R_Transcript_92237.p1


Annotated TAIR IDAT5G27680.1
Annotated Gene NameRECQ helicase SIM
Annotated Gene Symbol(s)RECQSIM
Annotation TypeOrtholog
Chromosome Positionchr5:9794244-9798637 | Reverse length=858
E-Value7.2E-303
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.9601688414973
Replicate 23.0523256111799
Replicate 33.2795989950438
Condition 2: 8 Hour
Replicate 13.2360173939091
Replicate 23.3492069718075
Replicate 33.5383646253397
Condition 3: 24 Hour
Replicate 14.4499714450175
Replicate 23.5949100394333
Replicate 33.9532858685586


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_92237.p1 GENE.R_Transcript_92237~~R_Transcript_92237.p1 ORF type:complete len:908 (+),score=178.15,DEAD|PF00270.25|1.4e-16,DEAD|PF00270.25|5.5e+03,Helicase_C|PF00271.27|7.9e+03,Helicase_C|PF00271.27|1.6e-15,RecQ_Zn_bind|PF16124.1|1.6e+04,RecQ_Zn_bind|PF16124.1|1.3e-09 R_Transcript_92237:246-2969(+)
ATGGATGGGAATCCAGAGTCTACTGACCAAGTTGTTGCAAAGCTTCTTGACATGGGCTTTGAAAGTTCTCAAGTCATGGAAGCTATAGAGGCAGTGGGTCCATTATTAAATGATGCAGTGGATCACATACTGAATCAATCTTCAAGGAAAAGCAACGATGCATCAACTAGTTGTAATTGTTTTGCTGCCGTTAACATGCCTAAAAAGGCCAAATCTTTGGGCAAGAGTTCCTTCTCCACACCTCGTCCGCTTGGTCAGATGAGACAGTCTAGCATAATGGATCATCTTCAGCCTGTAAGCAGGATAAAGAAGAGCCAGTCCAGTAGCAGTTATGAGGTAGTAACTTCCAACACAGATAAGCTAAACGTGCATTTAGGAGTGCAGATAGAAGTAGACAATCCTTGTACTGAAGAGATATTTCATCCTAACGAAACTTTTGAGTCAACTCCTCTATCATGCGTCGTAAATCCTCTTCAAAGAGAAGAGCATGATGTGGAAATCGGACCAGATTGGGAGCAGAAGGCAAACAGGCTATTGCGAAAACATTTTGGGTATTCAAAATTGAAAAAATTTCAAAAAGAGGCTCTTAGTGCTTGGTTAGCCCATCAAGATTGTCTTGTTCTCGCAGCAACTGGGTCCGGAAAATCTATATGTTTTCAGCTCCCTGCACTTTTGACCGGGAAGGTCGTGGTTGTCATTTCTCCATTGATAAGCTTGATGCATGACCAGTGCTTAAAGCTAGCAAAACATGGAGTCTCTGCATGCTTTCTTGGATCTGGACAACCTGACAGTAGTGTTGAAACGAAAGCAATGAAGGGGATGTATTCCATCATATATGTTTGTCCTGAGACAGTGTTAAGACTAATAAAGCCTCTTCAGAGGCTTGCTGAGAACCGTGGAATTGCTTTATTTGCCATTGATGAAGTACATTGTGTTTCAAAGTGGGGTCATGACTTTAGACCAGACTACAGGCGATTGTCTGTGTTGCGAGAGAATTTCAGTGTCAACAGTTTGCAGTCCTTGAAAATAGATATACCAATAATGGCATTGACCGCCACTGCCACCAACTGTGTCAGAGAAGACATCCTCAAGGCACTTCACATGTCAACTGAAGCCAAAGTTGTTCTCACAACATTCTTTCGGCCAAATCTTCATTTTTCAGTGAAGCATAGTAGAACATCTTCTCCATCTTCCTATGCTAAAGATCTCCATGAACTGGTTCAAGTATACTCTAGCAAGAAAAAAACCAGCGAAAGGTCCTTTGTCCGGACAGAGGATCTTCAGAATGCATCAGGCCACTCAACCAGTTCAAGTACTGATGGTAGTGATAGTGATAGTGATAGCGATAGCATGGAGGAGAATGATTTTGGTGGAGAGGATGATGAGGTCAACTCATGGAAGAAAAATGGCTTCAGTGCTCCAAAAGAGAGACAGTTATCAGTTGAATATCTGGAAGATGATTTTGATGACATTCAGACAGCAGATGACTTTGATGTTTCATGTGGTGAGTTTCTTGGACAAGTACCGGCCAATGAGCAGAAGGTTAATGGGTACTGTGAATTGCCAGATTCCCCTTCAAAGCCAGCAGGACCACAACTTATGCATGGTCCTTTGGTACAAGGGTCAACCATCATATATGTTCCTACCAGAAAAGAGACGCTAAGTATAGCAAAATTTCTCTGTGCAAAGGGCGTGAAGGCTGCTGCCTATAATGCAGCGTTGCCAAAATCACACTTACGACGAGTTCACCAGGAGTTTCACGAGAATACTTTAGACGTCGTCGTTGCAACTATTGCTTTCGGAATGGGCATCGACAAATTAAATGTGCGGAGGATAATCCATTATGGATGGCCTCAGAGTCTGGAAGCATATTATCAAGAAGCAGGTCGTGCTGGTCGCGATGGGAAGCCATCAGAGTGCATTTTGTATGCAAATCTATCCAGAATACCCACTCTCTTGCCTAACAAAAGAAGTGAGGAACAAAGAAAACAGGCGTACAAGATGTTATCTGATTGCTATAAATATGGTATGAATACTTCTCTTTGCCGAGCCAAAGTACTGGTTGAGTACTTTGGCGAAGAGTTCAGCAATCAGAGGTGCATGTCATGTGATGTTTGCAGAGATGGTCCTCCTGAACTGCAAAATTTGAAGGCCGAAGCAACTATTTTCATGCAACCTATTGCTGCTCAATACAAGCAGCAGATGTTTGCAGAAAATTCATATGATGACTTTATAGGAAATGATCTGAGGCGGCGGCCTGGAGGCTGTGAGAAGCTAAATCTCAGGATGGTTATTACGAAGATAAGGGAACAGTCCCAGAAATTTCTAGTCACTGATCAATTGTGGTGGCGGGGCCTAGCCCGGATTCTGGAGGACAAGGGTTTCATCAGGGAGGGAAGTGACATGATTTCTGTTCAAATAAAGTATCCCGAGCCAACTGAGAAGGGGCTGAAAATTTTGGAATCAGCTGAGCAGCAGGATTTTAATGTTTATCCTGAGGCCGACATGCTATTATCATTGACCAGAGAACAAAAGCCTTTTTCTTCTTTCTCAGAATGGGGAAAGGGCTGGGCAGATCCTGAGATTCGAAGACAGCGGCTAAAAAGGAGGAGATCAAGCAAGAAACCACGAAATCATAGTAAGAGAAAGTCGAGGAAGCTACAGCAAGAGCCAAAAACAGTCCGAGGCAGATTAGCAGCCAAACTCTCGAAGCAGATGAGATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_92237.p1 GENE.R_Transcript_92237~~R_Transcript_92237.p1 ORF type:complete len:908 (+),score=178.15,DEAD|PF00270.25|1.4e-16,DEAD|PF00270.25|5.5e+03,Helicase_C|PF00271.27|7.9e+03,Helicase_C|PF00271.27|1.6e-15,RecQ_Zn_bind|PF16124.1|1.6e+04,RecQ_Zn_bind|PF16124.1|1.3e-09 R_Transcript_92237:246-2969(+)
MDGNPESTDQVVAKLLDMGFESSQVMEAIEAVGPLLNDAVDHILNQSSRKSNDASTSCNCFAAVNMPKKAKSLGKSSFSTPRPLGQMRQSSIMDHLQPVSRIKKSQSSSSYEVVTSNTDKLNVHLGVQIEVDNPCTEEIFHPNETFESTPLSCVVNPLQREEHDVEIGPDWEQKANRLLRKHFGYSKLKKFQKEALSAWLAHQDCLVLAATGSGKSICFQLPALLTGKVVVVISPLISLMHDQCLKLAKHGVSACFLGSGQPDSSVETKAMKGMYSIIYVCPETVLRLIKPLQRLAENRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFSVNSLQSLKIDIPIMALTATATNCVREDILKALHMSTEAKVVLTTFFRPNLHFSVKHSRTSSPSSYAKDLHELVQVYSSKKKTSERSFVRTEDLQNASGHSTSSSTDGSDSDSDSDSMEENDFGGEDDEVNSWKKNGFSAPKERQLSVEYLEDDFDDIQTADDFDVSCGEFLGQVPANEQKVNGYCELPDSPSKPAGPQLMHGPLVQGSTIIYVPTRKETLSIAKFLCAKGVKAAAYNAALPKSHLRRVHQEFHENTLDVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGKPSECILYANLSRIPTLLPNKRSEEQRKQAYKMLSDCYKYGMNTSLCRAKVLVEYFGEEFSNQRCMSCDVCRDGPPELQNLKAEATIFMQPIAAQYKQQMFAENSYDDFIGNDLRRRPGGCEKLNLRMVITKIREQSQKFLVTDQLWWRGLARILEDKGFIREGSDMISVQIKYPEPTEKGLKILESAEQQDFNVYPEADMLLSLTREQKPFSSFSEWGKGWADPEIRRQRLKRRRSSKKPRNHSKRKSRKLQQEPKTVRGRLAAKLSKQMR*

Click here to download the sequence:
Link to NCBI Protein BLAST