Transcript Information: R_Transcript_92350.p1


Annotated TAIR IDAT5G48050.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:19472661-19473770 | Reverse length=369
E-Value2E-13
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.87305597447487
Replicate 20.39703793890664
Replicate 30.58604556697609
Condition 2: 8 Hour
Replicate 13.0505193260194
Replicate 29.6507476689433
Replicate 318.817910009122
Condition 3: 24 Hour
Replicate 11.9918898373314
Replicate 21.1285227018538
Replicate 33.286807711603


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_92350.p1 GENE.R_Transcript_92350~~R_Transcript_92350.p1 ORF type:3prime_partial len:899 (+),score=152.54,rve|PF00665.22|1.2e-24,UBN2_3|PF14244.2|1.7e-19,UBN2|PF14223.2|9.1e-16,gag_pre-integrs|PF13976.2|2e-12,DUF4219|PF13961.2|3.1e-10,DUF4219|PF13961.2|1.3e+03,DUF4219|PF13961.2|5.4e+03,DUF4219|PF13961.2|5.2e+03,UBN2_2|PF14227.2|4.6e-08,Retrotrans_gag|PF03732.13|8e-08,Retrotrans_gag|PF03732.13|1.6e+04,zf-CCHC|PF00098.19|5.5e-06 R_Transcript_92350:1854-4547(+)
ATGGCGGATGTTGGTACTTCAACGAGCGGAATGATAAAGCTCAATGAAACCAACTACAACAATTGGAGTTTTCGCATGAAATACTATTTACTCGGCCAGGAATTGTGGGAGATCGTTGGTGGAAGTGATACAGTAGCACCACCCAAGGAAAAGGCCGAAGATTATAAGAAGTGGAAAACAAAGGCTGGAAAAGCCATGTATGCTCTCACTATCTCTATAGAAGATGATTTGTTGTCTAAGATCAAAGAAACCAAGACACCCAAGGAGGCTTGGGATACGTTATCGGCATTGTTCGAAAAGACGAATGATGCACAATTACAACGACTCGAGAATGAGCTCTTATCCGTCAAGCAAGAAGGCATGACGGTGTCCCAATACTTTACTAAAGTAAAAACTTTATGTAAAGAAATCTCGAAGTTAGATAAAGAAAATCCCATCACCGACACCAGAGTACGAAGAATTATTGTTCACGGGCTACGACCAGAGTTCAATAGTCTGGTTACGGCTACACGTGGATGGGCCGCTCAACCAACCTTGGATGAGCTGGAAAACATTCTAGCCAATCAAGAATCTCTAGACAAGCAGATGTCTGGAGTCTCGGTGAAAGAGGAGGATAAGGCTCTTTTCAGTAGAGCACCAAAGGGACAGGAAAATAGTTCAAGATCCTATGGAGAACGGAAGCCGAGAGGAAGGCAAGGTCGCTGGAACAAGAAGCAGGCGGAGAGAAGTTCTCAGCAAGGGGGAGCTCATTATGAACAAGGCAAGGGCTACTATGACAGGCAACGAGGTCCAAAGCCCAAAGTTGTATGCTATAAGTGCGGTAAGAGAGGTCACTATGCCCGTGATTGTTGGAGCAAACCCACAGAGGGTAATGTGGCCACATCATCCCAACAAGGGGGAGAAGAAGTATGGGATTTCCATGCTAATACCGCTATAGTAGAGCCATGTTCAAGTTTCGATATGGAGGGATCATTGGTTGAAGAAAACTTAGCACTTGCTGTCACCAAGGAGAAGGGAATCAATTATCAATCTGATTGGATTGTTGATTCCGGGTGTTCCAACCATATGATTGGTGATATGGCAAAACTCCAAAGTACAACAGAGTACAAAGGAGAGAGTCATGTTGTTACCGCAAGTAACACTCGATTGCCAATCACTCATGTTGGAAAAACAATGGTCGCGCCCCGATTCAATTCTCAACAAGTGAAGTTGGAGAATGTCTACCATGTGGAAGGGATGAAGAAGAATCTCTTGTCAGTCTCACAACTTACATCTTCTGGCAACTATGTGGTCTTTGGCCCAGATGATGTTAAGGTGTATCGGAAGTTAAGGCCGATTGGAGTACCACTCATGAAAGGGCAACGATTAGATTCTATCTATGTGATGTCAGCACAGGAGGCCTACGTAGATAAGACAAGGAGGAATGAGACGGCAGATTTATGGCATGCAAGGCTAGGGCATGTCAGCTATCACATGCTACATACCATGATGAAAAAGTCATCGCTCAATGGTCTACCTCAGATGGACATACGAAGTGATGTAGTATGCGCTGGCTGTCAATATGGCAAAGCACATCAATTGCCATATAAGGAGTCGAAGTACCGAGCCAAGAGACCACTAGAGCTGGTACATTCAGATGTCTTTGGTCCTGTGAAGCAGACATCAATAAGTGGGTATCAATACATGATTACCTTTATTGATGATTATTCAAGATATGTCTGGGTGTACTTCATGAAAGAGAAGTCAGAAGCCTTATCCAAATTCATGGCATTCAAAGATGAAGCTGAAAAGGAAGTTGGTTCCAAGATACACTGCTTGCGCACCGACAATGGAGGAGAGTACACATCTCGTGACTTTGGAAAGTACTTGCAGCAGAATCGGATCAGGAGACAGTTAACCTGTCCAAATACTCCACAACAAAATGGAGTAGCTGAGAGGAAGAATCGACATCTTGCTGAGACATGTCGAAGTATGTTACACACCAAAAATGTGCCACCACGTTTTTGGGCTGAGTGTATGCTTACAGCGGTACATGTGAGAAATCGCTTACCTCAAGCAAAGCTTGGATTTATGTCACCATTTGAGAAGCTGTGGAATCTCAAACCCACTGTAAATCATTTCAAAGTGTTCGGGTGTGTTTGTTATGTGTTCGTGCCTGACCATCTCCGCACCAAATTCGACAAGAAGGCAATTCGTTGTATCTTTGTCGGATATGACACACAGAGGAAAGGATGGAAGTGCTGCAATCCGTCCACTGGTCGTTGTTTTGTTTCAAGAAATGTGATATTTGATGAGGCATCATCTTGGTGGTCACCACAAGCAGTAGCACTGCCAAATACAAAGGAGATGGAAGAGCAACTTGAAGAAATGGAAGCCCAACAAGAGTCAGAGGCATCCGATGATGAAAGTGACAAGGCATCAGACAAGGTGGTCGAGGTCAAGTCACCAGAAAAGATGAAGAGTCCATGGAAATCTGGAGTACATCAAGTCACTCCAGAAGAAGAAAGACCCAGCCAGATCGAAATTGAAGATGAAGAGGAAGAACCCACGCCGCAACTCCGAAGGTCCACCAGAATCAGGTACCCAAATCGGAAGTATGCAACCCATGCAAATACTGCAATGCTGGAAGTCAAGGAACCAACCACATTTGATGAAGCAGCTGAGAATAAGAAATGGAGAAAGGCGATGGAAGAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_92350.p1 GENE.R_Transcript_92350~~R_Transcript_92350.p1 ORF type:3prime_partial len:899 (+),score=152.54,rve|PF00665.22|1.2e-24,UBN2_3|PF14244.2|1.7e-19,UBN2|PF14223.2|9.1e-16,gag_pre-integrs|PF13976.2|2e-12,DUF4219|PF13961.2|3.1e-10,DUF4219|PF13961.2|1.3e+03,DUF4219|PF13961.2|5.4e+03,DUF4219|PF13961.2|5.2e+03,UBN2_2|PF14227.2|4.6e-08,Retrotrans_gag|PF03732.13|8e-08,Retrotrans_gag|PF03732.13|1.6e+04,zf-CCHC|PF00098.19|5.5e-06 R_Transcript_92350:1854-4547(+)
MADVGTSTSGMIKLNETNYNNWSFRMKYYLLGQELWEIVGGSDTVAPPKEKAEDYKKWKTKAGKAMYALTISIEDDLLSKIKETKTPKEAWDTLSALFEKTNDAQLQRLENELLSVKQEGMTVSQYFTKVKTLCKEISKLDKENPITDTRVRRIIVHGLRPEFNSLVTATRGWAAQPTLDELENILANQESLDKQMSGVSVKEEDKALFSRAPKGQENSSRSYGERKPRGRQGRWNKKQAERSSQQGGAHYEQGKGYYDRQRGPKPKVVCYKCGKRGHYARDCWSKPTEGNVATSSQQGGEEVWDFHANTAIVEPCSSFDMEGSLVEENLALAVTKEKGINYQSDWIVDSGCSNHMIGDMAKLQSTTEYKGESHVVTASNTRLPITHVGKTMVAPRFNSQQVKLENVYHVEGMKKNLLSVSQLTSSGNYVVFGPDDVKVYRKLRPIGVPLMKGQRLDSIYVMSAQEAYVDKTRRNETADLWHARLGHVSYHMLHTMMKKSSLNGLPQMDIRSDVVCAGCQYGKAHQLPYKESKYRAKRPLELVHSDVFGPVKQTSISGYQYMITFIDDYSRYVWVYFMKEKSEALSKFMAFKDEAEKEVGSKIHCLRTDNGGEYTSRDFGKYLQQNRIRRQLTCPNTPQQNGVAERKNRHLAETCRSMLHTKNVPPRFWAECMLTAVHVRNRLPQAKLGFMSPFEKLWNLKPTVNHFKVFGCVCYVFVPDHLRTKFDKKAIRCIFVGYDTQRKGWKCCNPSTGRCFVSRNVIFDEASSWWSPQAVALPNTKEMEEQLEEMEAQQESEASDDESDKASDKVVEVKSPEKMKSPWKSGVHQVTPEEERPSQIEIEDEEEEPTPQLRRSTRIRYPNRKYATHANTAMLEVKEPTTFDEAAENKKWRKAMEE

Click here to download the sequence:
Link to NCBI Protein BLAST