Transcript Information: R_Transcript_92395.p1


Annotated TAIR IDAT5G13980.1
Annotated Gene NameGlycosyl hydrolase family 38 protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:4508626-4514334 | Forward length=1024
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 180.160476729227
Replicate 242.625142438918
Replicate 355.942304741624
Condition 2: 8 Hour
Replicate 139.35823189771
Replicate 246.873102168549
Replicate 350.027179513525
Condition 3: 24 Hour
Replicate 154.215229896328
Replicate 236.887366910285
Replicate 349.688705683763


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_92395.p1 GENE.R_Transcript_92395~~R_Transcript_92395.p1 ORF type:complete len:1029 (+),score=177.13,Glyco_hydro_38C|PF07748.9|8.6e-100,Glyco_hydro_38|PF01074.18|4e-93,Alpha-mann_mid|PF09261.7|5.6e-20 R_Transcript_92395:226-3312(+)
ATGAAGAAATTCTCGAGCTCTTCTTCAATGGCGGCGGCTTCGATAATAGCGGTGGCGTTAGTGGTGGTGACTGCCAACATAGGAGTGGTGGAATCGAGGTATATGGTGTACAATACATCAGCAAAGATAGTACCGGGAAAACTTAACGTTCATATGGTCCCTCACACTCACGATGATGCCGGTTGGTTGAAGACTGTTGATCAGTACTACGTCGGCTCTAACAACTCCATTCAGGTGGCGTGTGTACGGTACATTCTGGACTCGTTGATTCCGGCCTTGCAGGCTGATAAGAATCGCAAATTCGTTTACGTTGAGATGGCGTTTTTTATGCGGTGGTGGAGAGAGCAAAGTGAGGATATGAAGAAAGTAGTCAAAGGCCTGGTCAAGTCTGGTCAACTGGAAATCATAAATGGGGGTATAGTCATGCATGATGAGGCAGATCCACACTACATAGACATGATTGATCAGACAACGCTTGGTCATCGATTCCTTAAAAAGGAATTTGGGTTGGCACCGAGGATCGGTTGGCAAATTGATCCCTTTGGACATTCAGCTGTGCAAGCCTACTTGTTGGGAGCAGAGGTCGGTTTTGATTCACTATTCTTTGCAAGGATAGATTACCAAGATCGGCAGAAGCGTATGGATGAAAAGAGTCTTGAATTTGTTTGGCAGGGCTCTAAAAGTCTTGGGTCGACAGCTCAGATCTTTGCTGGGGCATTTTGGCAAGGGAACTATGAGCCTCCTACTGGTTTTCATTTTGAAATTAATGATGATGCCCAAGTTGTCCAAGATGATCCTGATTTGTTCGACTACAATGTTCAACAGCGTGTTGATGACTTTGTTGCTTGGGCATTATCACAGGCAAATGTTACTCGAACAAATCATATAATGTGGACAATGGGAACAGATTTCAAGTATCAGTATGCACATACATGGTTCACACAGATGGACAAGCTGATTCATTATGTCAACCTGGATGGACGTGTCAATGCACTCTACTCAACACCAAGTTTATATACGGATGCAAAACATGCTACTCATGTTTCCTGGCCAACAAAAACTGACGATTTCTTCCCATATGCAGATAGAATTAATGCATACTGGACTGGGTACTTTACTAGTAGACCAGCCATTAAGCGATATGTCAGGGAGTTGAGTGGATATTATATGGCAGCAAGACAACTGGAATATTTTATAGGAAGGAGTAATTCAGGCCCCAAGACAGATAATCTAGGAGATGCTTTAGCTATAGCTCAACATCATGATGCTGTCACTGGTACTGAAAAGCAACATGTGGCCAATGACTATGCAAAAAGACTTTCAATCGGTTACGGAGAGGCTGAGGCAGTGGTTGCAGCAGCAATTGGTTGCTTGACCCAATCTTCCCCAGCTACTGGTTGTCAGAACCCTACTACTAAGTTTCAGCAGTGTCCACTTATGAATATAAGTTACTGTCCTGCATCAGAAACTGACCTCTCTCACGGGAAAAACTTGATTGTTGTTATCTATAATCCTCTTGGATGGAAGAGATCAGATGTTGTCCGAATTCCAGTCAGTAGTGAAGATGTTATGGTTCGTGATTATGAAGGAAAGGAGATAGACTCACAAGTTTTACCTATAGCTAATATGCAATTGGGGCTGAGAAACTTCCATTCGGCGTCATACTTTGGGGCAACTGTAAGAGACGCACCCAAGTATTGGCTCGCATTTACAGCATCTGTACCACCTCTTGGGTTCAGCACTTATTCTGTGTCGGGTGCCAAAGGTGCTAAACTGACAACAGCATCTGTTTACACATACCAAGGACATGAGGAGTCTAGTTTTGATATTGGTCCAGGCAATTTGAGACTTACGTTTTCTGAGGAGAATGGCAAAATGACTTATTACAGCAATCAAAGAAATTCGGTTAAGAAATCTGTTGAGGTTTCTTACAGTTACTATCAAGGATTTAATGGAACTGATAAAGATCCTCAGGCTTCAGGGGCATATGTATTCCGTCCTAACGGCACACATCTCATACAGTCTGCAAGGAAGATTCCATCAACAGTTATGCGTGGTCCTCTGATAGATGAAGTACATCAAGAGATCAATTCATGGATATATCAGATCACGAGGCTCTACAAGGAAAAAGAGCATGTTGAAGTCGAATATATGGTTGGGCCTATACCTGTTGATGATGGGATTGGAAAAGAAGTTGTGACCAAAATCGCTACTGAGATGCCGTCAAATAGAACATTTTACACAGATTCAAATGGCCGTGATTTCATTGAAAGGATCCGTGATTATAGATCAGACTGGGATCTGCAAGTGAATGAACCAGTTGCTGGGAATTATTATCCTATTAATCTTGGAATATTCTTGCATGACAATATGAATGAGCTCTCCATTTTGGTGGATAGAGCTGTTGGAGGATCTAGCATATCAGACGGTCAGATAGAGCTTATGCTCCATAGGCGGCTGCTCAAAGATGATGGTAGAGGTGTTGCAGAGGCTTTAAATGAAACAGTTTGTGCCCATGACAAGTGCACAGGCCTAACTATCCAAGGGAAATATTATTTTAGGATTGATCCACTTGGAGGTGGTGCAAAATGGAGACGTTCTTTTGGTCAACAGATATACTCTCCACTTCTTTTGGCCTTCGCTGAGCAGGACGAAGATAACTGGATGAATTCTCACATGCCCACCTTTTCAGGAATTGATCCTTCTTACAGCTTACCTGAAAACATTGCTATGATAACGCTTCAGGAGCTTGATGATGGAAAAGTCCTCCTCCGACTAGCACATTTATTCGAGGTCGGAGAAGACAAGGATCTTTCAGTTATGGCAAATGTAGAGCTAAAGCGACTTTTCCCATCGAAGAAGATTAGCAACATTACAGAAACAAACCTATCTGCCAATCAAGAGAGAGCAGAAATGCAGAAGAAGAGACTGTCATGGAAGGCAAAAGGCTCCCTACCTAATCAGTCCAAGGTTATGAGGGGAGGACCTATCGATCCTGCAAAGCTGGTCGTAGAACTTGGTCCAATGGAGATTCGCACTCTGCTTATTGCATTTAACCAGAAGTCTGACAGAATATTTTATGCTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_92395.p1 GENE.R_Transcript_92395~~R_Transcript_92395.p1 ORF type:complete len:1029 (+),score=177.13,Glyco_hydro_38C|PF07748.9|8.6e-100,Glyco_hydro_38|PF01074.18|4e-93,Alpha-mann_mid|PF09261.7|5.6e-20 R_Transcript_92395:226-3312(+)
MKKFSSSSSMAAASIIAVALVVVTANIGVVESRYMVYNTSAKIVPGKLNVHMVPHTHDDAGWLKTVDQYYVGSNNSIQVACVRYILDSLIPALQADKNRKFVYVEMAFFMRWWREQSEDMKKVVKGLVKSGQLEIINGGIVMHDEADPHYIDMIDQTTLGHRFLKKEFGLAPRIGWQIDPFGHSAVQAYLLGAEVGFDSLFFARIDYQDRQKRMDEKSLEFVWQGSKSLGSTAQIFAGAFWQGNYEPPTGFHFEINDDAQVVQDDPDLFDYNVQQRVDDFVAWALSQANVTRTNHIMWTMGTDFKYQYAHTWFTQMDKLIHYVNLDGRVNALYSTPSLYTDAKHATHVSWPTKTDDFFPYADRINAYWTGYFTSRPAIKRYVRELSGYYMAARQLEYFIGRSNSGPKTDNLGDALAIAQHHDAVTGTEKQHVANDYAKRLSIGYGEAEAVVAAAIGCLTQSSPATGCQNPTTKFQQCPLMNISYCPASETDLSHGKNLIVVIYNPLGWKRSDVVRIPVSSEDVMVRDYEGKEIDSQVLPIANMQLGLRNFHSASYFGATVRDAPKYWLAFTASVPPLGFSTYSVSGAKGAKLTTASVYTYQGHEESSFDIGPGNLRLTFSEENGKMTYYSNQRNSVKKSVEVSYSYYQGFNGTDKDPQASGAYVFRPNGTHLIQSARKIPSTVMRGPLIDEVHQEINSWIYQITRLYKEKEHVEVEYMVGPIPVDDGIGKEVVTKIATEMPSNRTFYTDSNGRDFIERIRDYRSDWDLQVNEPVAGNYYPINLGIFLHDNMNELSILVDRAVGGSSISDGQIELMLHRRLLKDDGRGVAEALNETVCAHDKCTGLTIQGKYYFRIDPLGGGAKWRRSFGQQIYSPLLLAFAEQDEDNWMNSHMPTFSGIDPSYSLPENIAMITLQELDDGKVLLRLAHLFEVGEDKDLSVMANVELKRLFPSKKISNITETNLSANQERAEMQKKRLSWKAKGSLPNQSKVMRGGPIDPAKLVVELGPMEIRTLLIAFNQKSDRIFYA*

Click here to download the sequence:
Link to NCBI Protein BLAST