Transcript Information: R_Transcript_92421.p3


Annotated TAIR IDAT5G35695.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41980.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:13869120-13869941 | Forward length=211
E-Value1E-18
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.2168640636479
Replicate 20.55990134443462
Replicate 31.5271158397435
Condition 2: 8 Hour
Replicate 12.2853473950762
Replicate 22.2360881841186
Replicate 31.452128849631
Condition 3: 24 Hour
Replicate 12.7549368673245
Replicate 21.7644207112462
Replicate 30.72959015622991


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_92421.p3 GENE.R_Transcript_92421~~R_Transcript_92421.p3 ORF type:complete len:150 (-),score=25.97,DDE_Tnp_4|PF13359.2|7.1e-12 R_Transcript_92421:2325-2774(-)
ATGAAAGGGTTTCTTGCTCCTTTTAAGGGAAAAACACTTCGTTATCATCTTCCAGATTTTAAACGTTCAAGCCAACCTCCAACAGGATATCACGAAGTCTTTAATTTTGCACATGCATCGCTTCGGAATGTAATTGAACGTACATTTGGAGTTTGGAAAAATAGGTGGAGGATATTGTTTAAGATGCCAAGTTACAAATTCTCTACGCAATGTAAAATTGTGGCAACCACTATGGCTCTTCACAATTTTATCAGAAAGCACGCAATTAATGATGAAGAGTTTGACAAGTGTGATGAAGACCCCAATTACATGCCCGATGTAGATGGTGAAAATGAGGAAGAGGAAAGCAATAGAGATGATAGTTCATATGAGCATGGTGGAGCATTGGATGATCGTGATATGGCTATTGTTCGTAATGCAATTGTTAGATCTTTAATGCATGGAAAATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_92421.p3 GENE.R_Transcript_92421~~R_Transcript_92421.p3 ORF type:complete len:150 (-),score=25.97,DDE_Tnp_4|PF13359.2|7.1e-12 R_Transcript_92421:2325-2774(-)
MKGFLAPFKGKTLRYHLPDFKRSSQPPTGYHEVFNFAHASLRNVIERTFGVWKNRWRILFKMPSYKFSTQCKIVATTMALHNFIRKHAINDEEFDKCDEDPNYMPDVDGENEEEESNRDDSSYEHGGALDDRDMAIVRNAIVRSLMHGK*

Click here to download the sequence:
Link to NCBI Protein BLAST