Transcript Information: R_Transcript_9276.p1


Annotated TAIR IDAT5G14230.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: XB3 Ortholog 2 in Arabidopsis thaliana (TAIR:AT5G57740.1); Has 66374 Blast hits to 25358 proteins in 1201 species: Archae - 121; Bacteria - 8133; Metazoa - 29530; Fungi - 5885; Plants - 3349; Viruses - 785; Other Eukaryotes - 18571 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:4591883-4595775 | Forward length=751
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 110.547635588189
Replicate 27.0498526945234
Replicate 38.1093195139664
Condition 2: 8 Hour
Replicate 19.6513628259215
Replicate 211.31645601695
Replicate 314.728861659122
Condition 3: 24 Hour
Replicate 112.596071848777
Replicate 26.3589980012978
Replicate 310.571069051944


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_9276.p1 GENE.R_Transcript_9276~~R_Transcript_9276.p1 ORF type:5prime_partial len:822 (+),score=118.06,Ank_2|PF12796.3|0.035,Ank_2|PF12796.3|0.01,Ank_2|PF12796.3|0.00022,Ank_2|PF12796.3|6.6e-08,Ank_2|PF12796.3|1.6e-05,Ank_2|PF12796.3|2.4e-13,Ank_5|PF13857.2|0.069,Ank_5|PF13857.2|85,Ank_5|PF13857.2|3e+03,Ank_5|PF13857.2|1.8e+02,Ank_5|PF13857.2|1.2e+02,Ank_5|PF13857.2|0.054,Ank_5|PF13857.2|3.9e-05,Ank_5|PF13857.2|5.3e-06,Ank_5|PF13857.2|20,Ank_5|PF13857.2|0.0023,Ank_5|PF13857.2|0.007,Ank_5|PF13857.2|2.3e-08,Ank_4|PF13637.2|0.75,Ank_4|PF13637.2|61,Ank_4|PF13637.2|2.1e+03,Ank_4|PF13637.2|0.028,Ank_4|PF13637.2|2.7e-08,Ank_4|PF13637.2|7.4e-07,Ank_4|PF13637.2|0.0074,Ank_4|PF13637.2|2.2e-08,Ank_3|PF13606.2|0.084,Ank_3|PF13606.2|2.5e+02,Ank_3|PF13606.2|12,Ank_3|PF13606.2|2.3e+03,Ank_3|PF13606.2|2.8e+03,Ank_3|PF13606.2|0.031,Ank_3|PF13606.2|0.03,Ank_3|PF13606.2|1.7e+02,Ank_3|PF13606.2|1.6e+02,Ank_3|PF13606.2|0.082,Ank_3|PF13606.2|0.0037,Ank_3|PF13606.2|1.3e+04,Ank|PF00023.26|4.9,Ank|PF00023.26|1.1e+03,Ank|PF00023.26|4.5e+02,Ank|PF00023.26|3.2e+03,Ank|PF00023.26|6.3e+03,Ank|PF00023.26|4.6,Ank|PF00023.26|0.027,Ank|PF00023.26|1.5,Ank|PF00023.26|9.8e+02,Ank|PF00023.26|5.9e+03,Ank|PF00023.26|0.045,Ank|PF00023.26|8.5e-06,Ank|PF00023.26|3.5e+03 R_Transcript_9276:1-2466(+)
AGTCCCCTTCCCTTCACTGAACAACTCTCACAGTCAGAGATAGAGAGAGAAACAGAGGAGAGAGAGAGAAAAGTAGAGTTGTACGGACTTCAATTCATCATTCATGCGATCCTCCTGCTAAAAAAATCAACCTCACCGAGACCTCTCTCTTTCTCTCTCCTACATCCGCTATTTTTTCCGGCGAGAATGACGGTGTTTTCTCACTCCGTCACCGGCGTCGGCGGAGGCAAACAGGTCTTTCCGGTAGACTACGAGGCAGAAGTCTCTCAACGCCTCCTCGATTCTCTCTCCTCCTCTGATCTCGACTCCGTCTCCGAGTGCCTCTCCGATCCTTTCGTCGACGTCAACTTCATCGGCGCCGTCAATCTCAAGCTCCGACGAACCGAGGTCCTTCTTCGCGATCACTTTCCGAACGAAAATCGCGTCGTTTACGAGGACTTCAAAACTGACGCCACTCCTCTGTTCTTAGCTGTTCATTTCGGAAACTTGAATCTCGTCCGTCAATTTCTGAAAGCTGGAGCTAGTGTAAACCTGAAACTCTTCAGGGGATTTGTGACCACAGCAGCAGTGAGGGAAGGCCATCTTGAGATACTAAAGGTCTTGATCAAAGCCGGGGCTTCTCAGCCAGCTTGCGAGGAGGCCCTCTTGGAGGCAAGCTATCATGGGCGGGCAACGTTTGTGGAGCATCTTATGGGGTCTGATCTGATTCGGCCCCATGTTGCCCTGCATGCTTTTGTCACAGCATGTGCCAGAGGTTTCACTGATGTGGTTGATACAATGATGAAGTGTGGCGTGGATGCAAATGCAGTCGACCGTGTACTTCTCCAATCATCAAAGCCATCGCTTCATACCAACATTGACTGTAGTGGACTTGTGGCTGCAGTTGTTAGTAGGCAAGTCTCTGTTGTCCGCTTACTGCTACAGGCTGATGCAAGAACGGATGTTGAAGTGAAACTCGGAGCATGGTCATGGGACGTAGAGTCTGGGGAAGAGTTCCGAGTTGGAGCAGGACTAGCAGAGCCTTATCCCATCACGTGGTGTGCGGTTGAGTACTTTGAAATCAGTGGTGCAATACTCAGAATGCTCCTAAAGAAACACTCTCAAAACATCACTCATCTCGGAAGAACTCTTCTTCACCATGCCATTCTTTGTGGTAACGTTGGGGCTGTGAATGTGCTTCTTGACTGCAGAGCTGAGCTCGAGTCTCCAGTTAAAACCGCATCCAAGTCTCTGTCCCGCCCTTTGCACATGGCTGCTCGACTTGGATCAATGGCAATCCTCCGCTCTCTACTTGAAGCTGGCTGTGATATAAACTCGAGAACAGACACTGGCGACACTGCTCTAATGATCTGCGCAAAGTACAAGCAGCAAGAGTGCCTCAAGATATTCACAACAGCTGGTGCTGATTTCGGGCTGGTAAATAATAATGGTTGTTCTGTTGGGTCAATTGCTAGTGCAAACAAATGGTCTTCTGGTTTCCAAGCAGCAGTTTTCCAAGTCATTAAGGCAGGAAAAGTTCCTAAGAGCAGTAATTTCGCAGTCTTTTCACCTTTGCTCTTTGCTGCCCAAGCAGGTGATTTAGAGGCTTTGAAAATTGTCTTGGCGCAACCAAGTATAGACCTGAACCAACAGGATGACAATGGTTTCACAGCAGTCTTGGTCACAGCCCTAAAAGGTCATGTAGAATCTTTTCGGCTACTTGTATATGCCAAGGCTAATGTAAAGCTGTGCACTAAAACAGGTGAGACCGTGATCTCCTTATCTGAGCTTAGCCGCAAGAGAGACCTATTTGAGAAAGTACTGCTTGAGTACGCACTTCAAATGGACAACCGCAATGCCGAAGGGTTCTACGCTCTACATTGTGCATGCCGTCAAGGGGACTTAGTAGCTGTCCAGCTGTTGACCAGTAAGGGCTACGATGTTAATGTTCCTGATGGGGATGGCTACACACCGCTAATGCTAGCAGCAAGAGAAGGCCATGCTCAGGTATGTAAGCTCTTGATTTCGCAAGGAGCTCGCTGTGATTTTAAAAACACCAGAGGTGAAACTGTGCTATCACTGGCCAGAAAGAAAGGCGGAAAGGAAAATGCTACCGAATGTGTTATCCTGGATGAACTCGCACGTCAGGTGGTGTCGAGTGGTGCTCATGTCCAGAAACATACGAGAGCTGGAAAAGGGTCGCCCCATGCTAAAACAATCCGAATGGTAGGGGGCACAGGAGTCTTACAGTGGGGCACATCCAGCCGGAGAAATGTGATTTGTCGAGAAGTTGAAGCAGGGCCCAGTACTCGCTTTCGAAAGAACAGGAAGGGTAAGGGTGATGCAGATGAACCTGGGATATTCCATGTGGTGACTACCAAGAACAAGGAGGTGCATTTTGTGTGTGAAGGTGGATATGAAGCTGCTCAACTGTGGGTTAGAGGGATTAAACTCCTAACCAAAGAGGCTGTTCTCAATTCCAAGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_9276.p1 GENE.R_Transcript_9276~~R_Transcript_9276.p1 ORF type:5prime_partial len:822 (+),score=118.06,Ank_2|PF12796.3|0.035,Ank_2|PF12796.3|0.01,Ank_2|PF12796.3|0.00022,Ank_2|PF12796.3|6.6e-08,Ank_2|PF12796.3|1.6e-05,Ank_2|PF12796.3|2.4e-13,Ank_5|PF13857.2|0.069,Ank_5|PF13857.2|85,Ank_5|PF13857.2|3e+03,Ank_5|PF13857.2|1.8e+02,Ank_5|PF13857.2|1.2e+02,Ank_5|PF13857.2|0.054,Ank_5|PF13857.2|3.9e-05,Ank_5|PF13857.2|5.3e-06,Ank_5|PF13857.2|20,Ank_5|PF13857.2|0.0023,Ank_5|PF13857.2|0.007,Ank_5|PF13857.2|2.3e-08,Ank_4|PF13637.2|0.75,Ank_4|PF13637.2|61,Ank_4|PF13637.2|2.1e+03,Ank_4|PF13637.2|0.028,Ank_4|PF13637.2|2.7e-08,Ank_4|PF13637.2|7.4e-07,Ank_4|PF13637.2|0.0074,Ank_4|PF13637.2|2.2e-08,Ank_3|PF13606.2|0.084,Ank_3|PF13606.2|2.5e+02,Ank_3|PF13606.2|12,Ank_3|PF13606.2|2.3e+03,Ank_3|PF13606.2|2.8e+03,Ank_3|PF13606.2|0.031,Ank_3|PF13606.2|0.03,Ank_3|PF13606.2|1.7e+02,Ank_3|PF13606.2|1.6e+02,Ank_3|PF13606.2|0.082,Ank_3|PF13606.2|0.0037,Ank_3|PF13606.2|1.3e+04,Ank|PF00023.26|4.9,Ank|PF00023.26|1.1e+03,Ank|PF00023.26|4.5e+02,Ank|PF00023.26|3.2e+03,Ank|PF00023.26|6.3e+03,Ank|PF00023.26|4.6,Ank|PF00023.26|0.027,Ank|PF00023.26|1.5,Ank|PF00023.26|9.8e+02,Ank|PF00023.26|5.9e+03,Ank|PF00023.26|0.045,Ank|PF00023.26|8.5e-06,Ank|PF00023.26|3.5e+03 R_Transcript_9276:1-2466(+)
SPLPFTEQLSQSEIERETEERERKVELYGLQFIIHAILLLKKSTSPRPLSFSLLHPLFFPARMTVFSHSVTGVGGGKQVFPVDYEAEVSQRLLDSLSSSDLDSVSECLSDPFVDVNFIGAVNLKLRRTEVLLRDHFPNENRVVYEDFKTDATPLFLAVHFGNLNLVRQFLKAGASVNLKLFRGFVTTAAVREGHLEILKVLIKAGASQPACEEALLEASYHGRATFVEHLMGSDLIRPHVALHAFVTACARGFTDVVDTMMKCGVDANAVDRVLLQSSKPSLHTNIDCSGLVAAVVSRQVSVVRLLLQADARTDVEVKLGAWSWDVESGEEFRVGAGLAEPYPITWCAVEYFEISGAILRMLLKKHSQNITHLGRTLLHHAILCGNVGAVNVLLDCRAELESPVKTASKSLSRPLHMAARLGSMAILRSLLEAGCDINSRTDTGDTALMICAKYKQQECLKIFTTAGADFGLVNNNGCSVGSIASANKWSSGFQAAVFQVIKAGKVPKSSNFAVFSPLLFAAQAGDLEALKIVLAQPSIDLNQQDDNGFTAVLVTALKGHVESFRLLVYAKANVKLCTKTGETVISLSELSRKRDLFEKVLLEYALQMDNRNAEGFYALHCACRQGDLVAVQLLTSKGYDVNVPDGDGYTPLMLAAREGHAQVCKLLISQGARCDFKNTRGETVLSLARKKGGKENATECVILDELARQVVSSGAHVQKHTRAGKGSPHAKTIRMVGGTGVLQWGTSSRRNVICREVEAGPSTRFRKNRKGKGDADEPGIFHVVTTKNKEVHFVCEGGYEAAQLWVRGIKLLTKEAVLNSK*

Click here to download the sequence:
Link to NCBI Protein BLAST