Transcript Information: R_Transcript_9279.p1


Annotated TAIR IDAT3G23590.1
Annotated Gene NameREF4-related 1
Annotated Gene Symbol(s)RFR1, MED33A
Annotation TypeOrtholog
Chromosome Positionchr3:8467638-8473469 | Forward length=1309
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 113.278649112403
Replicate 24.8159568706573
Replicate 37.7511822145951
Condition 2: 8 Hour
Replicate 16.5431569465386
Replicate 27.1940762925843
Replicate 310.113236500079
Condition 3: 24 Hour
Replicate 110.549121110686
Replicate 26.1774759950898
Replicate 39.0135589323786


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_9279.p1 GENE.R_Transcript_9279~~R_Transcript_9279.p1 ORF type:complete len:1321 (+),score=281.74 R_Transcript_9279:161-4123(+)
ATGGCAGTGATTGTAGAACAGAAGAGCATCTGGAACAGTGTCCTAGAGCAAACAAAGCATGCCCAAGAAATGGGTAGTGATCCCTTTGTATGGGCAATCCAAATTTCATCAGACCTGAGTTCTTCAGGTGTTTCTTTGCCTTCAACAGAACTTGCCCATGTTTTGGTTTCCTACATTTGTTGGGATAACAATGTTCCTTCATCATGGAAGTTTCTAGAAAGATCCCTTCTCGTTAACATGGTTCCCCCTTTGCTTGTTCTTGCTCTTCTTTCTACAAGGGTCATTCCATGCCGGCATTCTCACCCAGCAGGATATAGGCTTTACATGGAGCTTTTAAAAAGACATGTTTTCACTTTGAAGTCTCAGTTCAATACACCAAATTTCGAAAAAGTTATGATGTCAATAAAGCATGCCCTTCATCTATCTAAGATTTTTGGTCAGACAAGTGAGGCAGGGATTCTTGCGGCTGAATTTGTCTTTATAATTGTGTGGCAGCTACTTGATGCATCACTGGATGATGAAGGATTGTTTGATCTTATCCCAGAAAAGAAATCTATTTGGATAACAAATGTTCAAGAAATGGATATTGACACCTATGATAATTTTTATGAGAAGAGATTTGAACTGCTCGAGAAATTGAAGAGCATGAATACTGTGATGGCAGTTGAGATTATTAACCAATTTTTTCAAAATAATGTTACTTCTAGAATCCTTTCTTTGCTACGCCATAACATGCCTAAACAATGGGGAGAATTTATACAGCGATTGGAGCTGCTCGCAGAAAACTCTTCCGCATTAAAGGACTCAAAGAATATAAATCCCAATGTTCTCTTTCAAGTGGTTTCTAGTGGTCACAAAGTTCCATCCCAGGAGTTCACACGTACTTTGGACGAGTTTTGTGCTGTGACGGCTTCTAGATCTCTGGTTTCTTTTGCTGGATTTTGTAAGGGGACAAGTGACTCTGCTTTGTGGCTTCCTTTAGATATATTTCTAGAAGATTCCATGGATGGATCTCAAGTTACAGCAATAAGTGCAGTTGAAAGCATTACTGGTTTGGTAAAGTCCCTTCATGCAATCAACAATATCTCTTGGCATGATACCTTTCTGGCATTGTGGATTGCTGCTCTCCGCTTTGTTCAAAGGGAGAGGCATCCAATTGAGGGGCCGGTGCCTCGCCTTGATACTCGCATGTGTGTTTTGCTGTCAATCACGACCTTAGTGGTGGCTGATCTGATTGATGAAGAGGAGAATCTACTTGATGAACCAGAATGTATATCCACCAATCATTGGAAAGAGAAAAAAAATCCTGGAAACCGTCGCAAAGATCTGGTGTCCTGCTTACAGATTCTTGGTGATTATGAGACCTTGTTGAAACCACCTCTATCTGTTGTCTCTGCTGCCAATTTGGCTGCTGCAAAAGCAATGATGTTTGTTTCGGGCATTGATGTTGCAAGTGGATATTTTGAATGCATTAATGTCAATGATTTGCCAGTTAACTGTGCTGGAAATATGCGGCACTTAATAGTTGAAGCTTGCATTGCTAGGAATCTACTTGATACATCAGCATACTATTGGCCGGGTTATGTTAATGGTCAGATCAATCAATTTCCTGGTCTTATACCTTCTCAAGTGTCTGGATGGTCATCATTCATGCAGGGAGATCCACTTACACCTATGATGGTTAATGCTATGGTTGCAACTCCTGCTTCAAGTTTAGCAGAGCTGGAGAAGATATTTGAGCTTGCTGTCAGTGGATCTGAGGATGAGAAGATATATGCAGGTACAATTCTTTGTGGAGCATCATTAATGCATGGCTGGAATGTGCAGGAGCATAGTGTATATTTTATCAGTAGATTATTGTCTCCACCAGTTCCTGCTGATTTCGTCGGGTCTGACAGCCATCTGGTAGCGTATGCACCAATGCTGTTTGTACTTCTGGCCGGAATAGCACCTGTTGACTGTGTTCAGATTTTCTCTTTGCATGGCTTGGTTCCTCAACTTGCAGCATCATTAATGACAATCTGTGAAGTTTTTGGATCTTGTACTCCTAATTCTTCATGGACAGTCAGTGGCGAAGAAATTTCTGCACACGGTGTCTTCTCAAATGCATTTACTCTTCTTCTCAAGCTTTGGAGGTTTAATCAGCCACCTCTTGATTATGGTGTGGGAGATGTGCCTCCAGTTGGATCTCAACTTACTCCTGAGTATCTACTATTAATGCGGAACTCTCTCCTCCCATCCTCTGGGAATATTCTTAAGGATCGTAACAAAAGAAGACTCTCAGCTATGGCAAGTGCATCATGTCCGAAACCCATTTTTGTAGATTCATTCCCAAAGTTGAAACTCTGGTATCGGCAGCATCAAGCATGCATTGCTGCACCTCTCTCTGGTCTCATTCCTGAAAGCCCAGTACATCAGATTGTTGAGGTGCTTCTTAGCATGATCTTCAGGAAGATCAATAGAGGAAGCCAGTCTGCTGCAACATCTGGAAGTAGTAGTTCCTCTGGGCCCAGTAGTGAAGATAGCCCTCTCAGACCCCAGCTGCCTGCTTGGGATATCCTGGAAGCTGTTCCCTATGTTGTTGATGCAGCCTTAACAGCCTGTGCTCATGGACAAGTGACACCTCGTGAACTTGCTACTGGACTCAAAGATCTAGCTGATTTTCTTCCTGCATCTTTGGCAACCATAGTAAGTTACTTCTCAGCTGAAGTGACACGAGGTGTGTGGAAACCAGCTCTCATGAATGGAACTGATTGGCCAAGCCCTGCTGCGAATCTAGCTAATGTCGAGGAACAGATAAAAAAGATACTTGCAGCTACTGGGATTGATGTTCCAAGCCTTGCTGCAGTAAGTTCTCCAGCTACTCTTCCACTACCACTGGCTGCATTTTTAAGCCTTACTATAACCTACAAACTTGACACAGTATCTCAACGTTTCCTCAATCTTGCGGGTCCAGCCCTTGAGTCCCTTGCAGCTGCCTGTCCCTGGCCATGCATGCCAATTGTGGCTTCTTTATGGACACAAAAGGCAAAGCGTTGGAGTGACTTTCTTGTCTTCTCTGCATCGCGTACTATCTTCCTCCATGACCATGGAGCAGTGGTTCAGCTCCTTAGGAGTTGCTTCACCGCCACACTTGGTCTGAATACTCCTCCTATATCTAGTAAAGGTGGTGTTTCTTCCCTTCTTGGTCATGGGTTCGGGTCACATTTCAATGGCGGGATATCTCCCGTCGCTCCAGGAATACTGTATTTACGTGCATACCGTTCAGTCAGAGATATTATGTTTTTGGCAGAGGAGATTGTTTCTCTTTTGATGCGGTCTGTTCAAGAAATAGCAGTTACTGGGATTTCCAAGGAAAGACAACAGAAGCTCAGGAAGACCAAAATCGGAATAAGATACGGACATATTTCACTCACTGCAGCAATGGCTAAAGTTAAACTTGCAGCTTCTCTTGCAGCCACACTTTTGTGGTTATCTGGTGGACAGGCTTTGGTTCAATGTCTGCTAAAAGAAACTCTGCCTTCTTGGTTTATATCTGTCCAAAAATCTGTACTGGAAAAAGAATCCAAGGAAATAGTTTCAGAACTCAGAGGATATGCCCTAGCATGTTTTGCAGTTTTCTGCGGGACTTTTGCTTGGGGAATCGACTCGTCATCATCAGCATCAAAACGGCGCCCTAGACTACTCGGGCAACATTTGGAATTTTTACCGAGTGCCTTAGACAGGAAGATCTCTCTTGGTTGTGATTTGATAATTTGGCGGGCTTATGTGACCAGGTTCATAAGCCTAATGGTAGGATGCACACCAAATTGGGTGCTTGAAATCGACATGAATGTGTTGTTGAGATTGAGTAAGGGACTGGTGCAGTTGAATAAGAAGGGCCTTGCTTTAGCTTTGCTTACAATTGGTGGGATCAGTACCATGGGTGCAGCTGCTAAGCTCATTATAGAAAGTGATATTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_9279.p1 GENE.R_Transcript_9279~~R_Transcript_9279.p1 ORF type:complete len:1321 (+),score=281.74 R_Transcript_9279:161-4123(+)
MAVIVEQKSIWNSVLEQTKHAQEMGSDPFVWAIQISSDLSSSGVSLPSTELAHVLVSYICWDNNVPSSWKFLERSLLVNMVPPLLVLALLSTRVIPCRHSHPAGYRLYMELLKRHVFTLKSQFNTPNFEKVMMSIKHALHLSKIFGQTSEAGILAAEFVFIIVWQLLDASLDDEGLFDLIPEKKSIWITNVQEMDIDTYDNFYEKRFELLEKLKSMNTVMAVEIINQFFQNNVTSRILSLLRHNMPKQWGEFIQRLELLAENSSALKDSKNINPNVLFQVVSSGHKVPSQEFTRTLDEFCAVTASRSLVSFAGFCKGTSDSALWLPLDIFLEDSMDGSQVTAISAVESITGLVKSLHAINNISWHDTFLALWIAALRFVQRERHPIEGPVPRLDTRMCVLLSITTLVVADLIDEEENLLDEPECISTNHWKEKKNPGNRRKDLVSCLQILGDYETLLKPPLSVVSAANLAAAKAMMFVSGIDVASGYFECINVNDLPVNCAGNMRHLIVEACIARNLLDTSAYYWPGYVNGQINQFPGLIPSQVSGWSSFMQGDPLTPMMVNAMVATPASSLAELEKIFELAVSGSEDEKIYAGTILCGASLMHGWNVQEHSVYFISRLLSPPVPADFVGSDSHLVAYAPMLFVLLAGIAPVDCVQIFSLHGLVPQLAASLMTICEVFGSCTPNSSWTVSGEEISAHGVFSNAFTLLLKLWRFNQPPLDYGVGDVPPVGSQLTPEYLLLMRNSLLPSSGNILKDRNKRRLSAMASASCPKPIFVDSFPKLKLWYRQHQACIAAPLSGLIPESPVHQIVEVLLSMIFRKINRGSQSAATSGSSSSSGPSSEDSPLRPQLPAWDILEAVPYVVDAALTACAHGQVTPRELATGLKDLADFLPASLATIVSYFSAEVTRGVWKPALMNGTDWPSPAANLANVEEQIKKILAATGIDVPSLAAVSSPATLPLPLAAFLSLTITYKLDTVSQRFLNLAGPALESLAAACPWPCMPIVASLWTQKAKRWSDFLVFSASRTIFLHDHGAVVQLLRSCFTATLGLNTPPISSKGGVSSLLGHGFGSHFNGGISPVAPGILYLRAYRSVRDIMFLAEEIVSLLMRSVQEIAVTGISKERQQKLRKTKIGIRYGHISLTAAMAKVKLAASLAATLLWLSGGQALVQCLLKETLPSWFISVQKSVLEKESKEIVSELRGYALACFAVFCGTFAWGIDSSSSASKRRPRLLGQHLEFLPSALDRKISLGCDLIIWRAYVTRFISLMVGCTPNWVLEIDMNVLLRLSKGLVQLNKKGLALALLTIGGISTMGAAAKLIIESDI*

Click here to download the sequence:
Link to NCBI Protein BLAST