Transcript Information: R_Transcript_92796.p1


Annotated TAIR IDAT1G16830.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:5760793-5762619 | Forward length=608
E-Value2.6E-146
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.7576925363803
Replicate 21.0886970586229
Replicate 31.3574363019942
Condition 2: 8 Hour
Replicate 11.5961156410056
Replicate 21.4244709913644
Replicate 32.1781932744464
Condition 3: 24 Hour
Replicate 11.5305204818469
Replicate 21.0129081860858
Replicate 31.9131475207807


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_92796.p1 GENE.R_Transcript_92796~~R_Transcript_92796.p1 ORF type:complete len:675 (+),score=97.57,PPR_2|PF13041.2|0.0092,PPR_2|PF13041.2|0.66,PPR_2|PF13041.2|0.0008,PPR_2|PF13041.2|5.9e-14,PPR_2|PF13041.2|7.5e-09,PPR_2|PF13041.2|1.4e-06,PPR_2|PF13041.2|1.3e-14,PPR_2|PF13041.2|1.6e-06,PPR_2|PF13041.2|0.61,PPR_2|PF13041.2|4.4e-06,PPR_2|PF13041.2|2.3e-05,PPR|PF01535.16|16,PPR|PF01535.16|3.5,PPR|PF01535.16|1.1e+02,PPR|PF01535.16|23,PPR|PF01535.16|6.5e-07,PPR|PF01535.16|7.1e-05,PPR|PF01535.16|0.073,PPR|PF01535.16|5.5e-07,PPR|PF01535.16|0.0017,PPR|PF01535.16|0.83,PPR|PF01535.16|0.022,PPR|PF01535.16|2.4e-05,PPR_1|PF12854.3|0.39,PPR_1|PF12854.3|1.5e+02,PPR_1|PF12854.3|25,PPR_1|PF12854.3|6.3e-07,PPR_1|PF12854.3|1.2e-08,PPR_1|PF12854.3|12,PPR_1|PF12854.3|2.4e+02,PPR_1|PF12854.3|5.1e-06,PPR_1|PF12854.3|4.2e-05,PPR_1|PF12854.3|10,PPR_1|PF12854.3|16,PPR_1|PF12854.3|0.00058,PPR_3|PF13812.2|3.4e+03,PPR_3|PF13812.2|0.31,PPR_3|PF13812.2|5.6e+02,PPR_3|PF13812.2|85,PPR_3|PF13812.2|0.00049,PPR_3|PF13812.2|9.7e-07,PPR_3|PF13812.2|3.6e+02,PPR_3|PF13812.2|2.5e+03,PPR_3|PF13812.2|0.61,PPR_3|PF13812.2|1.7e+02,PPR_3|PF13812.2|2.1e+03,PPR_3|PF13812.2|27,PPR_3|PF13812.2|0.28 R_Transcript_92796:172-2196(+)
ATGTTATGGAAAAATGTATTGTTTCCAAAACTATCAACTAACCCACTTAAATTTGAAGCTTTAAAAGCTCTTGGGACCTTCTCACCATGTTTGAATGGAAATACCCACAAGTTATATAGCAGTAAAACCCCAAGTTCTGAACTGGGTCGATGCTCAAAAAAAGTGGGTTTTAATCTAACCCCAACTTTTGTGCACTATACATTGGCTAATTGTTCATCTGATTTAGTTGCTTTGAGCTTCTTCATGTGGTGTGCAAGGCAAAATAATTATTTTCATGATCGCCTCGCGTTTACCCATATGGTTCCTGTTGTTGGTAGACTTGCCTTGAAGTTTAATTCAGTTGATGAGATTGTTAGACGGTTAAAGGATGTTGGTTGTGTTATTAAGGCACAAACCTTTTTGCTTTTGCTTAGGATTTTTTGGCTGGGAGGAATGTATAGTTTGGTGTTTGATGTATTTGAGGATATGAATAAGTTTGGGTATACCGTGAATACATTTGTGTATAATGTAATTATTGATGTTTCATTTAAGATTGGCCGTAAGGATGTGGCATTAAGAATACTAAAGGAGATTGAGGTCCCTAATTTTTTGAGCTTCAATATTGCTGTATGTAATCTTTGCAAGTTGAATGATTTGGAGAATTTGCAGGGTGTTATAAGGATCATGTTGAGGTCTGGGTATTATCCTGATCCAAAGACATTTGTTAAGGTTCTAAATTGTTTCTGTAAAAAGGGTACCCTAATACAGACCTTTCAAGTTTTAGGGCTCATGATTGGTTTAGGAATCCAAGTCTCTGTAGCTGTTTGGAATATTTTGATTGATGGATTGTGCAAAACAGGAAGGCCTGTTGCTGCTTCTAAGATACTGGATAAGATGATTGTTAGTGGTTGCTCTCCAAATGTTGTGACTTACACTTCTTTACTGAAGGCATTTACGGAGTTTGAAAGGGTTGATGATGCTTTTAGGATACTTTCAATGATGGAAGAAAATGGATGCGAACCAGACTTGTTTTTTTCAAATATTTTGATGCATCGGCTCTCGAAAATGGGGATGTATAATAAAGCTGTGGGCATTTTCTTTGACTTGAGAAAGCGTAATATGAAGCCTGATTTATATACTTTTGCTTCTCTCTTTTCTGCCATTCGATTGTCAGGAAAATTTCATCTCCTTCCTCAGCTGGTTAAAGGAGTTCCCCTTCCAGCTGATGTTGTAATTTGTAACTCCCTTCTTAGTTGTTTATGTAAGGCTGGGCTTTCGCGTCATGCTGTAGAACTTTACCATGAAATGGAGGATAGTGGCTACACACCAGACAAGTATAGTTATACTGAATTACTTGTTGGACTCTGCAGAGATAGAAAAATTGACGAGGCAGTGAATTTGTACCAGCGAATGGTTATGAGCCACTTCAATCTTGATGCTTATGTCCATACTGTTGTAATCGATGGGCTCATTAAAGTTGGGAAGTATCACCAAGCTATTTACTTCTTCAAGCAGGTTTTGGCCAAGAATTACTCTTTGGATGTTGTATTATGCACAGTTAGCATCGAGGGACTTGTTAGAGGAAACATGGTCGGTGAAGCGTTGACTTTGTACAATAAGATGAAGGAACTTGGGGTTAGTCCTAATGCACGTATTTACAACCTTATGCTTTCTGGTCTTTGCAAGGAAAGAGATGTCAATATGGTTAAAATGATTCTACAGGAAATGCATGATAAAGGAGTTAAACTAGAGTATAGAACTTTTATCAGGATGTCAAATGTTGTGTTTGAATCAAGATATTACTTTCCAGTCTTTAATCTATTGGTTAAGATGTGGGATTCAGGATTGGTAGCGGATAATCTCATGCGTATACTGTTGCTTGAAGGGCATTCCCGTGGCATCATAGTAGGTGATATGTTTGTGTTACTCAAAAGGTTTGTGGGAGATAACTCATTCATAGACACATCCAGGTCAAAAAGGTATTTAGTTGAAGAGACATCCAGTTTGGATGACCTTTCAGATGCTGTTGCATCAGTTAGTTGTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_92796.p1 GENE.R_Transcript_92796~~R_Transcript_92796.p1 ORF type:complete len:675 (+),score=97.57,PPR_2|PF13041.2|0.0092,PPR_2|PF13041.2|0.66,PPR_2|PF13041.2|0.0008,PPR_2|PF13041.2|5.9e-14,PPR_2|PF13041.2|7.5e-09,PPR_2|PF13041.2|1.4e-06,PPR_2|PF13041.2|1.3e-14,PPR_2|PF13041.2|1.6e-06,PPR_2|PF13041.2|0.61,PPR_2|PF13041.2|4.4e-06,PPR_2|PF13041.2|2.3e-05,PPR|PF01535.16|16,PPR|PF01535.16|3.5,PPR|PF01535.16|1.1e+02,PPR|PF01535.16|23,PPR|PF01535.16|6.5e-07,PPR|PF01535.16|7.1e-05,PPR|PF01535.16|0.073,PPR|PF01535.16|5.5e-07,PPR|PF01535.16|0.0017,PPR|PF01535.16|0.83,PPR|PF01535.16|0.022,PPR|PF01535.16|2.4e-05,PPR_1|PF12854.3|0.39,PPR_1|PF12854.3|1.5e+02,PPR_1|PF12854.3|25,PPR_1|PF12854.3|6.3e-07,PPR_1|PF12854.3|1.2e-08,PPR_1|PF12854.3|12,PPR_1|PF12854.3|2.4e+02,PPR_1|PF12854.3|5.1e-06,PPR_1|PF12854.3|4.2e-05,PPR_1|PF12854.3|10,PPR_1|PF12854.3|16,PPR_1|PF12854.3|0.00058,PPR_3|PF13812.2|3.4e+03,PPR_3|PF13812.2|0.31,PPR_3|PF13812.2|5.6e+02,PPR_3|PF13812.2|85,PPR_3|PF13812.2|0.00049,PPR_3|PF13812.2|9.7e-07,PPR_3|PF13812.2|3.6e+02,PPR_3|PF13812.2|2.5e+03,PPR_3|PF13812.2|0.61,PPR_3|PF13812.2|1.7e+02,PPR_3|PF13812.2|2.1e+03,PPR_3|PF13812.2|27,PPR_3|PF13812.2|0.28 R_Transcript_92796:172-2196(+)
MLWKNVLFPKLSTNPLKFEALKALGTFSPCLNGNTHKLYSSKTPSSELGRCSKKVGFNLTPTFVHYTLANCSSDLVALSFFMWCARQNNYFHDRLAFTHMVPVVGRLALKFNSVDEIVRRLKDVGCVIKAQTFLLLLRIFWLGGMYSLVFDVFEDMNKFGYTVNTFVYNVIIDVSFKIGRKDVALRILKEIEVPNFLSFNIAVCNLCKLNDLENLQGVIRIMLRSGYYPDPKTFVKVLNCFCKKGTLIQTFQVLGLMIGLGIQVSVAVWNILIDGLCKTGRPVAASKILDKMIVSGCSPNVVTYTSLLKAFTEFERVDDAFRILSMMEENGCEPDLFFSNILMHRLSKMGMYNKAVGIFFDLRKRNMKPDLYTFASLFSAIRLSGKFHLLPQLVKGVPLPADVVICNSLLSCLCKAGLSRHAVELYHEMEDSGYTPDKYSYTELLVGLCRDRKIDEAVNLYQRMVMSHFNLDAYVHTVVIDGLIKVGKYHQAIYFFKQVLAKNYSLDVVLCTVSIEGLVRGNMVGEALTLYNKMKELGVSPNARIYNLMLSGLCKERDVNMVKMILQEMHDKGVKLEYRTFIRMSNVVFESRYYFPVFNLLVKMWDSGLVADNLMRILLLEGHSRGIIVGDMFVLLKRFVGDNSFIDTSRSKRYLVEETSSLDDLSDAVASVSC*

Click here to download the sequence:
Link to NCBI Protein BLAST