Transcript Information: R_Transcript_93023.p1


Annotated TAIR IDAT5G63180.1
Annotated Gene NamePectin lyase-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:25341106-25343113 | Reverse length=432
E-Value3.7E-202
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.4251399416218
Replicate 20.69821426562511
Replicate 30.59851333386622
Condition 2: 8 Hour
Replicate 11.744835981989
Replicate 21.3809570733274
Replicate 33.4492371725201
Condition 3: 24 Hour
Replicate 12.5629856049931
Replicate 21.1001435551119
Replicate 34.4191327752643


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_93023.p1 GENE.R_Transcript_93023~~R_Transcript_93023.p1 ORF type:3prime_partial len:421 (+),score=29.14,Pec_lyase_C|PF00544.15|8.3e-24,Beta_helix|PF13229.2|3.1e-06,Beta_helix|PF13229.2|37 R_Transcript_93023:156-1415(+)
ATGATGATGATTCATATGGGCAGTATTTCTTTGTCTCTTTTTCTATTATGTTACTATGTTAGCAGCTCCTTAGCCCTTGCTTCATCCATTTCACCTCAACATCCTGAGCTGGTGGTGCACGACGTCCAGAGCAAAATCAATGCCTCAAGGAGGAACTTGGGGTACCTCTCATGTGGAACGGGGAACCCAATAGACGACTGTTGGAGATGCGACCAAGACTGGGCCAACAACCGCCAACGGCTGGCCGACTGCGGCATAGGCTTTGGCCGCCACGCCTTGGGCGGGCGAGGCGGCCGAATCTACATGGTCACAGATTCGAGCGACAACGACCCAGCAAACCCAAGGCCAGGGACTCTTCGACATGCCGTCATACAAACCGAACCATTATGGATCATATTCAAACACGACATGGTCATAAACCTAAAACAACAACTCGTCATGAACTCATATAAGACCATCGATGGGAGAGGCGCCAGTGTCCACATCACTGGAGGTGGATGTATAACCATACATAGTGTCAACAACATCATCATACATGGCATCCACATACATGATTGTAAGCCTGTCGGGAATGCCATGATCAAGGTGTCCCCTAATAAAGATCACTTTTGGACTACATCGGATGGGGATGGAATAACCATACGTAGAGCCAGAGATATTTGGGTGGATCATTGTTCAATGTCGAATTGTTATGATGGACTCATTGATGTTACATTGGCTTCCACTTATGTCACCATTTCTAACAATTACATGACCCATCATGATAAGGCCATGCTTTTGGGTCATAGTGATTCTTTTGTTCAAGATAAGATCATGCAAGTCACTGTGGCTTTCAACCATTTTGGTGAAGGACTTGTTCAGAGAATGCCCAGGTGTAGACATGGATACTTCCATGTAGTAAATAATGATTATACACACTGGGAGATGTATGCGATTGGTGGAAGTGCATCCCCAACAATTTATAGTGAAGGCAACAGGTTTCTTGCGCCGGATGACTCCAATAAGAAACAGGTGACAAAGCATGAGCTGGCACCAGAGAGTGAATGGAGGCACTGGAATTGGAGATCCGAAGGGGACTTGATGCTAAACGGAGCATATTTCCAAGAATCTGGGGCTGGGGCTGCCTCAAGCTATGCCAGGGTGCTGGGGTGCTTAGCTGCAAGAAAGGCTCTCACTGCTGATCAATGTCAGGCTTGGAGTATTTATTTTGAGCATTCTTGCAAAATAACAATCACACAAAATTACTTCTATACCCATCTT

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_93023.p1 GENE.R_Transcript_93023~~R_Transcript_93023.p1 ORF type:3prime_partial len:421 (+),score=29.14,Pec_lyase_C|PF00544.15|8.3e-24,Beta_helix|PF13229.2|3.1e-06,Beta_helix|PF13229.2|37 R_Transcript_93023:156-1415(+)
MMMIHMGSISLSLFLLCYYVSSSLALASSISPQHPELVVHDVQSKINASRRNLGYLSCGTGNPIDDCWRCDQDWANNRQRLADCGIGFGRHALGGRGGRIYMVTDSSDNDPANPRPGTLRHAVIQTEPLWIIFKHDMVINLKQQLVMNSYKTIDGRGASVHITGGGCITIHSVNNIIIHGIHIHDCKPVGNAMIKVSPNKDHFWTTSDGDGITIRRARDIWVDHCSMSNCYDGLIDVTLASTYVTISNNYMTHHDKAMLLGHSDSFVQDKIMQVTVAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSASPTIYSEGNRFLAPDDSNKKQVTKHELAPESEWRHWNWRSEGDLMLNGAYFQESGAGAASSYARVLGCLAARKALTADQCQAWSIYFEHSCKITITQNYFYTHL

Click here to download the sequence:
Link to NCBI Protein BLAST