Transcript Information: R_Transcript_93024.p1


Annotated TAIR IDAT5G63180.1
Annotated Gene NamePectin lyase-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:25341106-25343113 | Reverse length=432
E-Value1.9E-217
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.5758436383788
Replicate 20.97063189272424
Replicate 30.6130757020868
Condition 2: 8 Hour
Replicate 11.5489841572467
Replicate 21.79539927192
Replicate 32.5615411581081
Condition 3: 24 Hour
Replicate 13.4632215282668
Replicate 20.2146497215628
Replicate 31.7041521897341


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_93024.p1 GENE.R_Transcript_93024~~R_Transcript_93024.p1 ORF type:complete len:411 (+),score=29.78,Pec_lyase_C|PF00544.15|8e-24,Beta_helix|PF13229.2|3e-06 R_Transcript_93024:156-1388(+)
ATGATGATGATTCATATGGGCAGTATTTCTTTGTCTCTTTTTCTATTATGTTACTATGTTAGCAGCTCCTTAGCCCTTGCTTCATCCATTTCACCTCAACATCCTGAGCTGGTGGTGCACGACGTCCAGAGCAAAATCAATGCCTCAAGGAGGAACTTGGGGTACCTCTCATGTGGAACGGGGAACCCAATAGACGACTGTTGGAGATGCGACCAGGACTGGGCCAACAACCGCCAACGCCTGGCCGATTGCGGCATAGGCTTTGGCCGCCACGCCTTGGGCGGGCGAGGCGGCCGAATCTACATGGTCACAGATTCGAGCGACAACGACCCAGCAAACCCAAGGCCAGGGACTCTTCGACATGCCGTCATACAAACCGAACCATTATGGATCATATTCAAACACGACATGGTCATAAACCTAAAACAACAACTCGTCATGAACTCATATAAGACCATCGATGGGAGAGGCGCCAGTGTCCACATCACTGGAGGTGGATGTATAACCATACATAGTGTCAACAACATCATCATACATGGCATCCACATACATGATTGTAAGCCTGTCGGGAATGCCATGATCAAGGTGTCCCCTAATAAAGATCACTTTTGGACTACATCGGATGGGGATGGAATAACCATACGTAGAGCCAGAGATATTTGGGTGGATCATTGTTCAATGTCGAATTGTTATGATGGACTCATTGATGTTACATTGGCTTCCACTTATGTCACCATTTCTAACAATTACATGACCCATCATGATAAGGCCATGCTTTTGGGTCATAGTGATTCTTTTGTTCAAGATAAGATCATGCAAGTCACTGTGGCTTTCAACCATTTTGGTGAAGGACTTGTTCAGAGAATGCCCAGGTGTAGACATGGATACTTCCATGTAGTAAATAATGATTATACACACTGGGAGATGTATGCGATTGGTGGAAGTGCATCCCCAACAATTTATAGTGAAGGCAACAGGTTTCTTGCGCCGGATGACTCCAATAAGAAACAGGTGACAAAGCATGAGCTGGCACCAGAGAGTGAATGGAGGCACTGGAATTGGAGATCCGAAGGGGACTTGATGCTAAACGGAGCATATTTCCAAGAATCTGGGGCTGGGGCTGCCTCAAGCTATGCCAGGGCATTTAGTTTAAGCGCTAGACCCTCTCATCTTGTGGGTACCATCACCAATGGTGCTGGGGTACTTAGCTGCAAGAAAGGCTCTCACTGCTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_93024.p1 GENE.R_Transcript_93024~~R_Transcript_93024.p1 ORF type:complete len:411 (+),score=29.78,Pec_lyase_C|PF00544.15|8e-24,Beta_helix|PF13229.2|3e-06 R_Transcript_93024:156-1388(+)
MMMIHMGSISLSLFLLCYYVSSSLALASSISPQHPELVVHDVQSKINASRRNLGYLSCGTGNPIDDCWRCDQDWANNRQRLADCGIGFGRHALGGRGGRIYMVTDSSDNDPANPRPGTLRHAVIQTEPLWIIFKHDMVINLKQQLVMNSYKTIDGRGASVHITGGGCITIHSVNNIIIHGIHIHDCKPVGNAMIKVSPNKDHFWTTSDGDGITIRRARDIWVDHCSMSNCYDGLIDVTLASTYVTISNNYMTHHDKAMLLGHSDSFVQDKIMQVTVAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSASPTIYSEGNRFLAPDDSNKKQVTKHELAPESEWRHWNWRSEGDLMLNGAYFQESGAGAASSYARAFSLSARPSHLVGTITNGAGVLSCKKGSHC*

Click here to download the sequence:
Link to NCBI Protein BLAST